KafsackLab / scRNAseq-MalariaLinks
Codes associated with the Poran, Nötzel et al. paper titled "Single-cell RNA-seq reveals a signature of sexual commitment in malaria parasites".
☆9Updated 7 years ago
Alternatives and similar repositories for scRNAseq-Malaria
Users that are interested in scRNAseq-Malaria are comparing it to the libraries listed below
Sorting:
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆46Updated last year
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆79Updated 3 years ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆50Updated 11 months ago
- codes used in the human kidney eQTL(cf) and eQTL(ci) and snATAC-seq data☆19Updated 4 years ago
- Single cell RNA-seq analysis bundle☆35Updated 5 years ago
- Contains code to analyze the OneK1K data and perform eQTL mapping of 14 cell types☆32Updated 3 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆76Updated 4 months ago
- ☆17Updated last year
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated last year
- ATAC-seq processing pipeline☆33Updated 3 years ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆30Updated 2 years ago
- scRNA-seq cell type identification☆43Updated 5 years ago
- An R package to time somatic mutations☆62Updated 4 years ago
- Single Cell Analysis of Five'Ends☆50Updated last year
- ☆47Updated 6 months ago
- R package for robust clustering of single cell RNA sequencing data☆39Updated 2 years ago
- Scripts for processing single liver cells RNA-Seq 10X Genomics Data☆24Updated 6 years ago
- ☆35Updated last year
- MMQTL is a statistical package applying meta-analysis to detect multiple QTL signals integrating signals among conditions, with control f…☆11Updated 3 months ago
- ☆86Updated 4 years ago
- ☆10Updated 6 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- ☆16Updated 6 years ago
- Processing pipeline scripts for sci-RNA-seq3 (bash, R, python)☆43Updated 4 years ago
- ☆33Updated 6 years ago
- A pipeline for scRNA-seq data analysis☆14Updated 3 months ago
- A tool for removing doublets from single-cell RNA-seq data☆74Updated 4 years ago
- Rmarkdown / compiled html files for human reprogramming dataset analysis☆18Updated 5 years ago