KafsackLab / scRNAseq-Malaria
Codes associated with the Poran, Nötzel et al. paper titled "Single-cell RNA-seq reveals a signature of sexual commitment in malaria parasites".
☆10Updated 7 years ago
Related projects ⓘ
Alternatives and complementary repositories for scRNAseq-Malaria
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆42Updated last year
- ☆11Updated 4 months ago
- ☆17Updated 5 years ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆27Updated last year
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 3 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆42Updated 3 years ago
- ☆31Updated 5 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 2 years ago
- Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data. Please download the R package from the RaceID3…☆15Updated 5 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆23Updated 2 years ago
- ☆18Updated 8 months ago
- ☆46Updated last year
- Robust Allele Specific Quantification and quality controL☆37Updated 2 years ago
- mutation(barcode) caller for 10x single cell data☆44Updated 4 years ago
- ☆15Updated 5 months ago
- ☆33Updated 5 years ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 2 years ago
- ATAC-seq processing pipeline☆31Updated 2 years ago
- R code for single-cell analysis of intestinal epithelial cells☆21Updated 7 years ago
- MMQTL is a statistical package applying meta-analysis to detect multiple QTL signals integrating signals among conditions, with control f…☆10Updated 2 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆41Updated 9 months ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- ☆27Updated 3 years ago
- ☆30Updated 7 months ago
- Code repo for all analysis done for the 'Pan-cancer whole genome comparison of primary and metastatic solid tumors' study.☆14Updated last year
- Analysis of single cell RNA-Seq data from Veres et al.☆12Updated 4 years ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆28Updated 10 months ago
- scRNA-seq cell type identification☆41Updated 5 years ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆43Updated 3 months ago
- Scripts for processing single liver cells RNA-Seq 10X Genomics Data☆23Updated 6 years ago