broadinstitute / 2019_scWorkshopLinks
Repo for Physalia course Analysis of Single Cell RNA-Seq data
☆32Updated 5 years ago
Alternatives and similar repositories for 2019_scWorkshop
Users that are interested in 2019_scWorkshop are comparing it to the libraries listed below
Sorting:
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆54Updated 4 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆58Updated last month
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆77Updated 3 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆76Updated 3 months ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆48Updated 10 months ago
- Tutorial for AMSI BioInfoSummer 2018☆29Updated 6 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 2 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆70Updated 5 months ago
- scRNA-seq cell type identification☆43Updated 5 years ago
- ATAC-seq Quality Control☆23Updated last month
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Updated 7 years ago
- ☆55Updated 4 years ago
- R package for robust clustering of single cell RNA sequencing data☆39Updated last year
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆50Updated 4 years ago
- Analytical pipeline developed to anlayze Cut and Run data. Inspired by both Henikoff (SEACR) and Orkin (Cut&RunTools) lab pipelines.☆18Updated last month
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- Reference transcriptome indices build from kallisto for popular organisms☆42Updated last year
- ☆38Updated 2 years ago
- Scripts for processing single liver cells RNA-Seq 10X Genomics Data☆24Updated 6 years ago
- ☆47Updated 5 months ago
- ☆34Updated 6 years ago
- ATAC-seq processing pipeline☆33Updated 3 years ago
- A tool for removing doublets from single-cell RNA-seq data☆74Updated 4 years ago
- An R package to time somatic mutations☆62Updated 4 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- Pipeline for Cut&Tag analysis☆21Updated 2 months ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆33Updated 2 years ago
- Clone of the Bioconductor repository for the DropletUtils package.☆59Updated last week