broadinstitute / 2019_scWorkshopView external linksLinks
Repo for Physalia course Analysis of Single Cell RNA-Seq data
☆33Nov 9, 2019Updated 6 years ago
Alternatives and similar repositories for 2019_scWorkshop
Users that are interested in 2019_scWorkshop are comparing it to the libraries listed below
Sorting:
- ☆13Updated this week
- Exercises for training scientists to perform some RNA-seq analyses.☆11Oct 7, 2019Updated 6 years ago
- scRNA seq analysis using Seurat V3☆13Jun 23, 2021Updated 4 years ago
- TransDTI: Transformer-based language models for estimating DTIs and building a drug-recommendation workflow☆13Oct 26, 2022Updated 3 years ago
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆12Aug 17, 2023Updated 2 years ago
- ☆13Dec 14, 2023Updated 2 years ago
- Know more about Shirley Liu lab at☆13Jan 27, 2026Updated 3 weeks ago
- ☆15Feb 28, 2022Updated 3 years ago
- ☆13Jan 8, 2020Updated 6 years ago
- ☆15Jun 11, 2019Updated 6 years ago
- Download binary executables and sample data here:☆18Oct 28, 2016Updated 9 years ago
- Codes for our paper "Single-Cell RNA-Seq Reveals Dynamic Early Embryonic-like Programs during Chemical Reprogramming" published by Cell S…☆11Sep 5, 2020Updated 5 years ago
- A re-analysis of the [Single-cell transcriptomic analysis of Alzheimer’s disease](https://www.nature.com/articles/s41586-019-1195-2) usin…☆14Dec 5, 2023Updated 2 years ago
- The gEAR Portal was created as a data archive and viewer for gene expression data including microarrays, bulk RNA-Seq, single-cell RNA-Se…☆19Feb 10, 2026Updated last week
- ☆15Oct 19, 2023Updated 2 years ago
- Next generation sequencing (NGS/HTS) tools.☆19Jan 25, 2024Updated 2 years ago
- R package to quickly obtain count vectors from indexed bam files☆15Jun 13, 2025Updated 8 months ago
- Snakemake skeleton - Build workflows with Snakemake☆19May 17, 2024Updated last year
- Code to run the scHLApers pipeline for personalized single-cell HLA quantification☆17Jan 10, 2024Updated 2 years ago
- ☆21May 27, 2024Updated last year
- Code for further development of the mutual nearest neighbours batch correction method, as implemented in the batchelor package.☆22Jan 6, 2020Updated 6 years ago
- ☆30Jan 3, 2025Updated last year
- Website☆16Aug 30, 2025Updated 5 months ago
- Clone of the Bioconductor repository for the scran package.☆46Sep 5, 2024Updated last year
- single cell analysis of treatment naive and treated human PDAC☆25May 27, 2022Updated 3 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆47Jun 12, 2023Updated 2 years ago
- Course Materials for Genomics Data Mining☆22Sep 18, 2025Updated 4 months ago
- Analysis of single cell RNA-seq data course☆679Apr 11, 2022Updated 3 years ago
- Hierarchical Cell Annotation☆26Nov 17, 2024Updated last year
- ☆25Jan 9, 2024Updated 2 years ago
- Shiny server configuration with Nginx load balancer☆26May 4, 2024Updated last year
- 2018 Recommended Papers to Read in Bioinformatics as Voted by Bioinformaticians☆26Jun 27, 2018Updated 7 years ago
- Spatial transcriptomics of heart tissue☆28Jun 16, 2022Updated 3 years ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Jan 25, 2022Updated 4 years ago
- Multi-resolution Variational Inference☆22Jan 19, 2026Updated 3 weeks ago
- Code relevant to sci-ATAC-seq of Drosophila embryogenesis.☆22Jun 9, 2019Updated 6 years ago
- Capybara: A computational tool to measure cell identity and fate transitions☆60May 23, 2022Updated 3 years ago
- Data and code for the paper "Developmental diversification of cortical inhibitory interneurons"☆24Dec 20, 2018Updated 7 years ago
- A database of useful gene signatures for single-cell analysis☆28May 19, 2025Updated 8 months ago