broadinstitute / 2019_scWorkshop
Repo for Physalia course Analysis of Single Cell RNA-Seq data
☆31Updated 5 years ago
Alternatives and similar repositories for 2019_scWorkshop:
Users that are interested in 2019_scWorkshop are comparing it to the libraries listed below
- ☆53Updated 4 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆73Updated this week
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- mutation(barcode) caller for 10x single cell data☆44Updated 4 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆53Updated 4 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆76Updated 2 years ago
- A single cell RNA-seq reference map of human hematopoietic development in the bone marrow, with balanced representation of hematopoietic …☆33Updated 3 months ago
- scRNA-seq cell type identification☆44Updated 5 years ago
- ☆77Updated last year
- A tool for removing doublets from single-cell RNA-seq data☆71Updated 4 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆46Updated 3 years ago
- ☆57Updated 4 years ago
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆45Updated 11 months ago
- A modular, containerized pipeline for ATAC-seq data processing☆54Updated last week
- Reference transcriptome indices build from kallisto for popular organisms☆42Updated last year
- ATAC-seq Quality Control☆22Updated last month
- ☆36Updated 2 years ago
- This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources…☆72Updated 6 years ago
- Pipelines for the analysis of 10x single-cell RNA-sequencing data☆57Updated last year
- R package for robust clustering of single cell RNA sequencing data☆38Updated last year
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆50Updated last year
- Clone of the Bioconductor repository for the DropletUtils package.☆56Updated 2 months ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆36Updated 2 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 2 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆32Updated 6 years ago