Alternatives and similar repositories for PPI_GNN:

Users that are interested in PPI_GNN are comparing it to the libraries listed below

• baranwa2 / Struct2Graph
  A PyTorch implementation of GCN with mutual attention for protein-protein interaction prediction
  ☆60Updated 3 years ago
• lvguofeng / GNN_PPI
  Codes and models for the paper "Learning Unknown from Correlations: Graph Neural Network for Inter-novel-protein Interaction Prediction".
  ☆78Updated 3 years ago
• DeepRank / Deeprank-GNN
  Graph Network for protein-protein interface
  ☆119Updated last year
• biomed-AI / GraphSite
  GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures
  ☆60Updated 7 months ago
• biomed-AI / GraphPPIS
  ☆51Updated 7 months ago
• fangyangbit / S-VGAE
  ☆19Updated 5 years ago
• zqgao22 / HIGH-PPI
  ☆84Updated 2 years ago
• samsledje / ConPLex_dev
  ☆48Updated last year
• KailiWang1 / DeepDTAF
  a deep learning architecture for protein-ligand binding affinity prediction
  ☆73Updated last year
• Liuxg16 / GeoPPI
  ☆82Updated 2 years ago
• jertubiana / ScanNet
  ☆122Updated last year
• xzenglab / TAGPPI
  ☆20Updated last year
• peizhenbai / DrugBAN
  Interpretable bilinear attention network with domain adaptation improves drug-target prediction.
  ☆117Updated 2 years ago
• vsomnath / holoprot
  Multi-Scale Representation Learning on Proteins (NeurIPS 2021)
  ☆47Updated last year
• anton-bushuiev / PPIRef
  Dataset and package for working with protein-protein interactions in 3D
  ☆90Updated last month
• 595693085 / DGraphDTA
  a novel DTA predition method using graph neural network
  ☆73Updated last year
• ZhonghuiGu / HEAL
  ☆49Updated 7 months ago
• MachineLearningLifeScience / meaningful-protein-representations
  ☆108Updated 3 years ago
• DeepGraphLearning / ESM-GearNet
  ESM-GearNet for Protein Structure Representation Learning (https://arxiv.org/abs/2303.06275)
  ☆88Updated last year
• drorlab / gvp
  Geometric Vector Perceptron --- a rotation-equivariant GNN for learning from biomolecular structure
  ☆138Updated 3 years ago
• guaguabujianle / MGraphDTA
  ☆50Updated 7 months ago
• muhaochen / seq_ppi
  This is the repository for PIPR. This repository contains the source code and links to some datasets used in the ISMB/ECCB-2019 paper "Mu…
  ☆96Updated 2 years ago
• CSUBioGroup / BACPI
  A bi-directional attention neural network for compound–protein interaction and binding affinity prediction.
  ☆30Updated 2 years ago
• OmicsML / awesome-molecule-protein-pretrain-papers
  ☆35Updated last year
• HeliXonProtein / binding-ddg-predictor
  open source repository
  ☆136Updated last year
• DeepGraphLearning / GearBind
  Pretrainable geometric graph neural network for antibody affinity maturation
  ☆51Updated last week
• LPDI-EPFL / masif_seed
  Masif seed paper repository
  ☆146Updated last year
• huankoh / PSICHIC
  PSICHIC (pronounced Psychic) - PhySIcoCHemICal graph neural network for learning protein-ligand interaction fingerprints from sequence da…
  ☆97Updated 9 months ago
• piercelab / antibody_benchmark
  Antibody-Antigen Docking and Affinity Benchmark
  ☆70Updated 4 years ago
• varun-shanker / structural-evolution
  ☆99Updated 8 months ago