Alternatives and similar repositories for PPI_GNN

Users that are interested in PPI_GNN are comparing it to the libraries listed below

• baranwa2 / Struct2Graph
  A PyTorch implementation of GCN with mutual attention for protein-protein interaction prediction
  ☆61Updated 4 years ago
• DeepRank / Deeprank-GNN
  Graph Network for protein-protein interface
  ☆120Updated last year
• biomed-AI / GraphSite
  GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures
  ☆60Updated last year
• biomed-AI / GraphPPIS
  ☆53Updated last year
• samsledje / ConPLex_dev
  ☆52Updated last year
• lvguofeng / GNN_PPI
  Codes and models for the paper "Learning Unknown from Correlations: Graph Neural Network for Inter-novel-protein Interaction Prediction".
  ☆81Updated 3 years ago
• muhaochen / seq_ppi
  This is the repository for PIPR. This repository contains the source code and links to some datasets used in the ISMB/ECCB-2019 paper "Mu…
  ☆106Updated 2 years ago
• peizhenbai / DrugBAN
  Interpretable bilinear attention network with domain adaptation improves drug-target prediction.
  ☆128Updated 2 years ago
• jertubiana / ScanNet
  ☆133Updated 3 months ago
• xzenglab / TAGPPI
  ☆22Updated 2 years ago
• MachineLearningLifeScience / meaningful-protein-representations
  ☆110Updated 3 years ago
• varun-shanker / structural-evolution
  ☆113Updated last year
• KailiWang1 / DeepDTAF
  a deep learning architecture for protein-ligand binding affinity prediction
  ☆76Updated last year
• zqgao22 / HIGH-PPI
  ☆89Updated 2 years ago
• GIST-CSBL / DeepConv-DTI
  DeepConv-DTI: Prediction of drug-target interactions via deep learning with convolution on protein sequences
  ☆78Updated 3 years ago
• aqlaboratory / rgn2
  ☆107Updated last year
• samsledje / D-SCRIPT
  A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions
  ☆104Updated 2 weeks ago
• OmicsML / awesome-molecule-protein-pretrain-papers
  ☆44Updated last year
• tbepler / prose
  Multi-task and masked language model-based protein sequence embedding models.
  ☆103Updated 4 years ago
• 595693085 / DGraphDTA
  a novel DTA predition method using graph neural network
  ☆74Updated 2 years ago
• kexinhuang12345 / MolTrans
  MolTrans: Molecular Interaction Transformer for Drug Target Interaction Prediction (Bioinformatics)
  ☆213Updated 3 years ago
• programmablebio / ptm-mamba
  ☆80Updated 3 months ago
• lishuya17 / MONN
  MONN: a Multi-Objective Neural Network for Predicting Pairwise Non-Covalent Interactions and Binding Affinities between Compounds and Pro…
  ☆104Updated 4 years ago
• drorlab / gvp
  Geometric Vector Perceptron --- a rotation-equivariant GNN for learning from biomolecular structure
  ☆151Updated 4 years ago
• HeliXonProtein / binding-ddg-predictor
  open source repository
  ☆141Updated last year
• gozsari / ProtFeat
  ProtFeat is protein feature extraction tool that utilizes POSSUM and iFeature.
  ☆20Updated last year
• PaccMann / paccmann_proteomics
  PaccMann models for protein language modeling
  ☆43Updated 3 years ago
• DeepGraphLearning / ESM-GearNet
  ESM-GearNet for Protein Structure Representation Learning (https://arxiv.org/abs/2303.06275)
  ☆109Updated last year
• anton-bushuiev / PPIRef
  Dataset and package for working with protein-protein interactions in 3D
  ☆96Updated 4 months ago
• duolinwang / S-PLM
  S-PLM: Structure-aware Protein Language Model via Contrastive Learning between Sequence and Structure
  ☆68Updated 3 months ago