Alternatives and similar repositories for PPI_GNN

Users that are interested in PPI_GNN are comparing it to the libraries listed below

• DeepRank / Deeprank-GNN
  Graph Network for protein-protein interface
  ☆120Updated last year
• baranwa2 / Struct2Graph
  A PyTorch implementation of GCN with mutual attention for protein-protein interaction prediction
  ☆61Updated 4 years ago
• muhaochen / seq_ppi
  This is the repository for PIPR. This repository contains the source code and links to some datasets used in the ISMB/ECCB-2019 paper "Mu…
  ☆105Updated 2 years ago
• biomed-AI / GraphSite
  GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures
  ☆61Updated last year
• samsledje / ConPLex_dev
  ☆54Updated last year
• 595693085 / DGraphDTA
  a novel DTA predition method using graph neural network
  ☆75Updated 2 years ago
• MachineLearningLifeScience / meaningful-protein-representations
  ☆110Updated 3 years ago
• biomed-AI / GraphPPIS
  ☆54Updated last year
• GIST-CSBL / DeepConv-DTI
  DeepConv-DTI: Prediction of drug-target interactions via deep learning with convolution on protein sequences
  ☆78Updated 3 years ago
• lvguofeng / GNN_PPI
  Codes and models for the paper "Learning Unknown from Correlations: Graph Neural Network for Inter-novel-protein Interaction Prediction".
  ☆83Updated 3 years ago
• peizhenbai / DrugBAN
  Interpretable bilinear attention network with domain adaptation improves drug-target prediction.
  ☆132Updated 2 years ago
• xzenglab / TAGPPI
  ☆22Updated 2 years ago
• drorlab / gvp
  Geometric Vector Perceptron --- a rotation-equivariant GNN for learning from biomolecular structure
  ☆158Updated 4 years ago
• varun-shanker / structural-evolution
  ☆116Updated last year
• aws-samples / lm-gvp
  LM-GVP: A Generalizable Deep Learning Framework for Protein Property Prediction from Sequence and Structure
  ☆64Updated last year
• DeepGraphLearning / ESM-GearNet
  ESM-GearNet for Protein Structure Representation Learning (https://arxiv.org/abs/2303.06275)
  ☆111Updated 2 years ago
• HeliXonProtein / binding-ddg-predictor
  open source repository
  ☆143Updated 2 years ago
• OmicsML / awesome-molecule-protein-pretrain-papers
  ☆46Updated last year
• programmablebio / ptm-mamba
  ☆81Updated 6 months ago
• KailiWang1 / DeepDTAF
  a deep learning architecture for protein-ligand binding affinity prediction
  ☆76Updated last year
• zqgao22 / HIGH-PPI
  ☆92Updated 2 years ago
• jertubiana / ScanNet
  ☆135Updated 5 months ago
• guaguabujianle / MGraphDTA
  ☆58Updated last year
• kexinhuang12345 / MolTrans
  MolTrans: Molecular Interaction Transformer for Drug Target Interaction Prediction (Bioinformatics)
  ☆219Updated 3 years ago
• ZhonghuiGu / HEAL
  ☆56Updated last year
• aqlaboratory / rgn2
  ☆108Updated 2 years ago
• anton-bushuiev / PPIRef
  Dataset and package for working with protein-protein interactions in 3D
  ☆96Updated 7 months ago
• BorgwardtLab / proteinshake
  Protein structure datasets for machine learning.
  ☆112Updated 7 months ago
• fangyangbit / S-VGAE
  ☆19Updated 6 years ago
• MartinThoma / propy3
  A Python 3 version of the protein descriptor package propy
  ☆46Updated 2 years ago