Python class to easily deal with protein networks.
☆21May 23, 2020Updated 6 years ago
Alternatives and similar repositories for biographs
Users that are interested in biographs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Browser-based tool for visualizing and analyzing germline copy number variants in genomic data☆12Nov 7, 2024Updated last year
- Source code for the "Computationally Tractable Riemannian Manifolds for Graph Embeddings" paper☆37Jun 11, 2020Updated 6 years ago
- GaudiMM: A modular optimization platform for molecular design☆32May 10, 2024Updated 2 years ago
- 🔍 Fit3D - An application for template-based detection of small structural motifs in protein structures and macromolecular structure data…☆11Oct 16, 2018Updated 7 years ago
- ☆15Jun 26, 2018Updated 8 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- the simple alchemistry test set☆10Nov 20, 2025Updated 7 months ago
- VCR-Graphormer: A Mini-batch Graph Transformer via Virtual Connections, ICLR 2024☆14May 9, 2024Updated 2 years ago
- ☆12Jan 29, 2022Updated 4 years ago
- A language model suite for numbering antigen receptor sequences.☆53Jul 1, 2026Updated last week
- Python code to extract features from Protein sequences for Machine Learning/Deep Learning☆21Mar 26, 2022Updated 4 years ago
- ☆24Nov 28, 2025Updated 7 months ago
- Codebase for SigmaDock: Untwisting Molecular Docking with SE(3) Fragmented Diffusion☆90Apr 7, 2026Updated 3 months ago
- ☆13May 30, 2019Updated 7 years ago
- BioMM: Biological-informed Multi-stage Machine learning framework for phenotype prediction using omics data☆14Jun 14, 2026Updated 3 weeks ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Predicting mutational effects on protein binding from folding energy. ICML 2025.☆45Jun 29, 2026Updated last week
- Prediction of Antibody CDR and protein loop flexibility☆17Sep 17, 2025Updated 9 months ago
- Scalable Maximum Likelihood Estimation of Phylogenetic Models☆27Mar 7, 2025Updated last year
- Rotamer Interaction Field Python Libraries for Computational Protein Design☆14Feb 2, 2018Updated 8 years ago
- SymPy based framework for optimized code generation for BSSN formulation of Einstein equation for heterogeneous platforms.☆11Jul 2, 2026Updated last week
- ☆68Nov 1, 2022Updated 3 years ago
- A Python toolkit to compute molecular features and predict activities and properties of small molecules☆21Jan 28, 2022Updated 4 years ago
- Benchmark interpretation of QSAR models☆14Aug 12, 2022Updated 3 years ago
- ☆24Sep 12, 2022Updated 3 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- My notes/usage examples for various Bioconductor packages☆15Jan 9, 2017Updated 9 years ago
- Prediction of B-cell epitopes from amino acid sequences using deep neural networks.☆18Sep 7, 2022Updated 3 years ago
- Differentiable Tree Machine☆14Nov 3, 2023Updated 2 years ago
- ☆19Aug 6, 2019Updated 6 years ago
- ☆20Oct 26, 2023Updated 2 years ago
- A Python-based wrapper for Noise Model Simulation (NMSIM). Eases the creation of input files and joining data from GIS databases.☆12Apr 10, 2024Updated 2 years ago
- Official Implementation of Video-MA2MBA☆12Dec 3, 2024Updated last year
- PePPer - Personalized Perturbation Profiler☆11Oct 4, 2018Updated 7 years ago
- Implementation of MOFF force field. Please cite us at Latham, A; Zhang, B J. Chem. Theory Comput. 2021, 17, 3134. (https://pubs.acs.org/d…☆11Jun 16, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆20Jan 9, 2023Updated 3 years ago
- python tools for interacting with ITSO-compliant smartcards☆15Jun 19, 2019Updated 7 years ago
- Gene ontology (GO) semantic similarity library for Python☆24Sep 28, 2018Updated 7 years ago
- Code and data for the paper 'Classifying Graphs as Images with Convolutional Neural Networks' (new title: 'Graph Classification with 2D C…☆77Dec 13, 2019Updated 6 years ago
- MDToolbox: A MATLAB/Octave toolbox for statistical analysis of molecular dynamics trajectories☆26Dec 7, 2019Updated 6 years ago
- PyTorch block-diagonal ODE CUDA solver, designed for gradient-based optimization☆16Apr 27, 2020Updated 6 years ago
- Association ruled based networks using graphical Hypergeometric Networks.☆36Feb 21, 2026Updated 4 months ago