Alternatives and similar repositories for HIGH-PPI

Users that are interested in HIGH-PPI are comparing it to the libraries listed below

• peizhenbai / DrugBAN
  Interpretable bilinear attention network with domain adaptation improves drug-target prediction.
  ☆136Updated 2 years ago
• lvguofeng / GNN_PPI
  Codes and models for the paper "Learning Unknown from Correlations: Graph Neural Network for Inter-novel-protein Interaction Prediction".
  ☆83Updated 3 years ago
• ZhonghuiGu / HEAL
  ☆57Updated last year
• muhaochen / seq_ppi
  This is the repository for PIPR. This repository contains the source code and links to some datasets used in the ISMB/ECCB-2019 paper "Mu…
  ☆107Updated 2 years ago
• DeepGraphLearning / ProtST
  [ICML-23 ORAL] ProtST: Multi-Modality Learning of Protein Sequences and Biomedical Texts
  ☆99Updated 2 years ago
• OmicsML / awesome-molecule-protein-pretrain-papers
  ☆46Updated last year
• biomed-AI / GraphPPIS
  ☆54Updated last year
• ykiiiiii / GraDe_IF
  Graph Denoising Diffusion for Inverse Protein Folding(NeurIPS 2023)
  ☆69Updated last year
• JhaKanchan15 / PPI_GNN
  ☆69Updated 3 years ago
• lihan97 / KPGT
  codes for KPGT (Knowledge-guided Pre-training of Graph Transformer)
  ☆121Updated last year
• DeepGraphLearning / ESM-GearNet
  ESM-GearNet for Protein Structure Representation Learning (https://arxiv.org/abs/2303.06275)
  ☆111Updated 2 years ago
• QizhiPei / SSM-DTA
  SSM-DTA: Breaking the Barriers of Data Scarcity in Drug-Target Affinity Prediction (Briefings in Bioinformatics 2023)
  ☆55Updated last year
• HamidHadipour / GraphBAN
  ☆28Updated 6 months ago
• chao1224 / ProteinDT
  A Text-guided Protein Design Framework, Nat Mach Intell 2025 (https://www.nature.com/articles/s42256-025-01011-z)
  ☆98Updated 11 months ago
• violet-sto / TGSA
  PyTorch implementation of "TGSA: Protein-Protein Association-Based Twin Graph Neural Networks for Drug Response Prediction with Similarit…
  ☆23Updated 4 years ago
• Layne-Huang / CoaDTI
  Multi-modal co-attention for drug-target interaction annotation and Its Application to SARS-CoV-2
  ☆17Updated 2 years ago
• chao1224 / GraphMVP
  Pre-training Molecular Graph Representation with 3D Geometry, ICLR'22 (https://openreview.net/forum?id=xQUe1pOKPam)
  ☆208Updated 3 years ago
• biomed-AI / GraphSite
  GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures
  ☆61Updated last year
• duolinwang / S-PLM
  S-PLM: Structure-aware Protein Language Model via Contrastive Learning between Sequence and Structure
  ☆71Updated last week
• wengong-jin / RefineGNN
  ☆129Updated 3 years ago
• baranwa2 / Struct2Graph
  A PyTorch implementation of GCN with mutual attention for protein-protein interaction prediction
  ☆61Updated 4 years ago
• programmablebio / ptm-mamba
  ☆84Updated 7 months ago
• SIAT-code / MASSA
  ☆23Updated 2 years ago
• CSUBioGroup / BACPI
  A bi-directional attention neural network for compound–protein interaction and binding affinity prediction.
  ☆33Updated 3 years ago
• guaguabujianle / MGraphDTA
  ☆58Updated last year
• microsoft / Drug-Interaction-Research
  ☆94Updated 2 years ago
• zhaoqichang / HpyerAttentionDTI
  HyperAttentionDTI: improving drug–protein interaction prediction by sequence-based deep learning with attention mechanism. This repositor…
  ☆44Updated 4 years ago
• lifanchen-simm / transformerCPI
  TransformerCPI: Improving compound–protein interaction prediction by sequence-based deep learning with self-attention mechanism and label…
  ☆151Updated 3 years ago
• drorlab / gvp
  Geometric Vector Perceptron --- a rotation-equivariant GNN for learning from biomolecular structure
  ☆159Updated 4 years ago
• lishuya17 / MONN
  MONN: a Multi-Objective Neural Network for Predicting Pairwise Non-Covalent Interactions and Binding Affinities between Compounds and Pro…
  ☆104Updated 5 years ago