Codes and models for the paper "Learning Unknown from Correlations: Graph Neural Network for Inter-novel-protein Interaction Prediction".
☆82Feb 8, 2022Updated 4 years ago
Alternatives and similar repositories for GNN_PPI
Users that are interested in GNN_PPI are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆92Mar 27, 2023Updated 3 years ago
- ☆69Nov 1, 2022Updated 3 years ago
- This is the repository for PIPR. This repository contains the source code and links to some datasets used in the ISMB/ECCB-2019 paper "Mu…☆112Jan 14, 2023Updated 3 years ago
- A PyTorch implementation of GCN with mutual attention for protein-protein interaction prediction☆61Aug 7, 2021Updated 4 years ago
- ☆10Apr 20, 2022Updated 3 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Full-length protein structure determination from cryo-EM maps using deep learning☆15May 28, 2023Updated 2 years ago
- ☆19Jun 27, 2024Updated last year
- ☆19Aug 6, 2019Updated 6 years ago
- DeepGraphGO: graph neural network for large-scale, multispecies protein function prediction☆35Jul 28, 2021Updated 4 years ago
- [ICLR 2022] OntoProtein: Protein Pretraining With Gene Ontology Embedding☆151Mar 10, 2025Updated last year
- Text mining tool to retrieve protein-protein interactions from the scientific literature.☆13Jun 9, 2019Updated 6 years ago
- Clusters protein chains based on CA distance difference☆16Mar 18, 2026Updated last week
- Code for ICLR 2024 (Spotlight) paper "MAPE-PPI: Towards Effective and Efficient Protein-Protein Interaction Prediction via Microenvironme…☆264Jun 20, 2024Updated last year
- A deep learning framework for predicting interactions between protein-protein interaction targets and modulators☆14Dec 2, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Machine learning notebooks and code used for demonstration purposes☆24Feb 17, 2021Updated 5 years ago
- Improving Inductive Link Prediction Using Hyper-Relational Facts☆15May 25, 2022Updated 3 years ago
- a method for CPI and DTA prediction☆11Jun 18, 2022Updated 3 years ago
- Rotamer Density Estimator is an Unsupervised Learner of the Effect of Mutations on Protein-Protein Interaction (ICLR 2023)☆63Jun 17, 2024Updated last year
- Explainable deep hypergraph learning modeling the peptide secondary structure prediction☆13Feb 27, 2023Updated 3 years ago
- This is a GitHub Repository containing the data and code used for a thorough comparison of 11 ligand binding site prediction tools☆17Nov 19, 2024Updated last year
- ☆22May 31, 2023Updated 2 years ago
- Code of "Instruction Multi-Constraint Molecular Generation Using a Teacher-Student Large Language Model"☆14Jul 8, 2025Updated 8 months ago
- ☆55Aug 3, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions☆112Feb 19, 2026Updated last month
- ☆16Nov 11, 2022Updated 3 years ago
- ☆47Nov 9, 2023Updated 2 years ago
- ☆31Feb 22, 2022Updated 4 years ago
- ☆13May 30, 2019Updated 6 years ago
- ☆11Jun 4, 2021Updated 4 years ago
- DDI-LLM:💊 Drug-Drug Interaction Prediction: Experimenting With Large Language-Based Drug Information Embedding For Multi-View Representa…☆14Sep 15, 2023Updated 2 years ago
- [IEEE TMI 2022] Official Implementation for "LE-UDA: Label-efficient unsupervised domain adaptation for medical image segmentation"☆11Nov 22, 2023Updated 2 years ago
- ☆11Sep 2, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Official implementation for the paper "EBMDOCK: NEURAL PROBABILISTIC PROTEIN-PROTEIN DOCKING VIA A DIFFERENTIABLE ENERGY-BASED MODEL" (IC…☆14Apr 24, 2024Updated last year
- GearNet and Geometric Pretraining Methods for Protein Structure Representation Learning, ICLR'2023 (https://arxiv.org/abs/2203.06125)☆317Jun 13, 2025Updated 9 months ago
- ☆11Apr 26, 2019Updated 6 years ago
- Deep learning protein-protein binding sites prediction☆22Feb 2, 2023Updated 3 years ago
- Graph Network for protein-protein interface☆122Mar 22, 2024Updated 2 years ago
- Orientation of the protein-protein interaction network using network diffusion techniques☆15Mar 16, 2021Updated 5 years ago
- A repo for implementation of Graph features autoencoder for expression values prediction and imputation☆18May 11, 2021Updated 4 years ago