piercelab / antibody_benchmarkView external linksLinks
Antibody-Antigen Docking and Affinity Benchmark
☆76Nov 17, 2020Updated 5 years ago
Alternatives and similar repositories for antibody_benchmark
Users that are interested in antibody_benchmark are comparing it to the libraries listed below
Sorting:
- Assessing the impact of mutations on antibody-antigen binding affinity☆18Dec 7, 2020Updated 5 years ago
- ☆10Mar 10, 2023Updated 2 years ago
- AbLang: A language model for antibodies☆157Sep 22, 2023Updated 2 years ago
- ☆15Jun 11, 2021Updated 4 years ago
- Graph Network for protein-protein interface including language model features☆34Mar 26, 2024Updated last year
- ☆108Apr 1, 2023Updated 2 years ago
- Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies☆403Sep 3, 2023Updated 2 years ago
- Code for "A Deep Learning Framework for Flexible Docking and Design"☆16Sep 29, 2022Updated 3 years ago
- Machine learning models for antibody sequences in PyTorch☆41May 25, 2021Updated 4 years ago
- ✌🏻 Antigen-Specific Antibody Design and Optimization with Diffusion-Based Generative Models for Protein Structures (NeurIPS 2022)☆353Jun 29, 2023Updated 2 years ago
- ☆130Sep 5, 2022Updated 3 years ago
- Efficient evolution from protein language models☆220Aug 26, 2023Updated 2 years ago
- open source repository☆146Nov 30, 2023Updated 2 years ago
- A structure checker in python☆24Nov 25, 2024Updated last year
- Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity☆57Jul 9, 2025Updated 7 months ago
- ☆51Aug 21, 2023Updated 2 years ago
- Protein design and variant prediction using autoregressive generative models☆119Jan 23, 2024Updated 2 years ago
- ☆47Jan 10, 2025Updated last year
- ☆91Sep 7, 2022Updated 3 years ago
- ☆116Dec 7, 2022Updated 3 years ago
- DockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Models☆364Nov 7, 2025Updated 3 months ago
- Fraction of Common Contacts Clustering Algorithm for Protein Structures☆27Aug 12, 2021Updated 4 years ago
- Dataset with quantitative binding scores of scFv-format antibodies against SARS-CoV-2 target peptide☆25Mar 30, 2023Updated 2 years ago
- Energy-based Graph Convolutional Networks for Scoring Protein Docking Models☆12Aug 31, 2021Updated 4 years ago
- Predict the structure of immune receptor proteins☆171Nov 11, 2025Updated 3 months ago
- ☆23Jul 4, 2021Updated 4 years ago
- ☆28Dec 6, 2022Updated 3 years ago
- BioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluatio…☆225May 13, 2025Updated 9 months ago
- ☆74Sep 2, 2020Updated 5 years ago
- ☆26Feb 16, 2022Updated 3 years ago
- Predicting Nanobody Binding Epitopes Based on a Pretrained RoBERTa-based Model☆15Jun 4, 2024Updated last year
- Antibody paratope prediction using Graph Neural Networks with minimal feature vectors☆37Mar 18, 2023Updated 2 years ago
- Rifdock Library for Conformational Search☆166May 16, 2024Updated last year
- Code for "Protein Docking Model Evaluation by Graph Neural Networks"☆59May 12, 2023Updated 2 years ago
- software used in paper "Antibody interface prediction with 3D Zernike descriptors and SVM"☆13Mar 28, 2021Updated 4 years ago
- Computationally Restoring the Potency of a Clinical Antibody☆19Mar 1, 2024Updated last year
- A pipeline that used ML model based on Rosetta descriptors to predict the binding affinity of protein-protein complexes☆49Oct 27, 2025Updated 3 months ago
- Unconstrained lattice antibody-antigen bindings generator☆111Nov 16, 2025Updated 2 months ago
- Antibody-specific masked language model☆67Jul 16, 2023Updated 2 years ago