QUST-AIBBDRC / StackPPI
Improving protein-protein interactions prediction accuracy using XGBoost feature selection and stacked ensemble classifier
☆11Updated 4 years ago
Alternatives and similar repositories for StackPPI:
Users that are interested in StackPPI are comparing it to the libraries listed below
- Sequence-based protein solubility prediction using multidimensional embedding☆11Updated 3 years ago
- MONN: a Multi-Objective Neural Network for Predicting Pairwise Non-Covalent Interactions and Binding Affinities between Compounds and Pro…☆101Updated 4 years ago
- A Python 3 version of the protein descriptor package propy☆41Updated 2 years ago
- AttentionDTA: drug--target binding affinity prediction by sequence-based deep learning with attention mechanism☆12Updated 3 years ago
- De novo molecular design with deep molecular generative models for protein-protein interaction(PPI) inhibitors☆20Updated 4 months ago
- Effective drug-target interaction prediction with mutual interaction neural network☆32Updated 2 years ago
- HydrAMP: a deep generative model for antimicrobial peptide discovery☆45Updated 4 months ago
- Generates consistent PSSM and/or PDB files for protein-protein complexes☆19Updated 2 years ago
- ☆20Updated last year
- Code and data used in https://doi.org/10.1101/2021.08.01.454656☆53Updated 2 years ago
- An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.☆24Updated last year
- Computer aided proximal decaging as a universal strategy for temporal protein activation☆23Updated 5 years ago
- ☆33Updated 11 months ago
- ☆51Updated 7 months ago
- My (small) research project in solubility of drug-like molecules☆18Updated 4 years ago
- A Python implementation for training a neural network for predicting drug-protein interactions using Keras and Tensorflow☆15Updated 6 years ago
- HoTS: Sequence-based prediction of binding regions and drug-target interactions.☆26Updated 2 years ago
- DeepCDA☆14Updated 5 years ago
- ☆32Updated 11 months ago
- ☆18Updated 6 months ago
- Geometry-aware protein binding site predictor☆18Updated 7 months ago
- Repo contains source code of the SurfaceID paper☆21Updated last year
- Prediction of protein-protein interaction sites using convolutional neural network and improved data sets☆9Updated 4 years ago
- A deep learning framework for predicting interactions between protein-protein interaction targets and modulators☆15Updated last year
- Fast and easy contact prediction.☆38Updated 10 months ago
- This repository contains the stand-alone tool for MusiteDeep server☆33Updated 4 years ago
- Some tutorials on how to use AMBER simulation package. Especially for Amber22+AmberTools23.☆15Updated 4 months ago
- HELM-GPT: de novo macrocyclic peptide design using generative pre-trained transformer☆20Updated 8 months ago
- Protein-protein interaction sites prediction through combining local and global features with deep neural networks☆53Updated 5 years ago
- This repository contains code for the paper: "Tertiary motifs as building blocks for the design of protein-binding peptides"☆16Updated last year