Improving protein-protein interactions prediction accuracy using XGBoost feature selection and stacked ensemble classifier
☆12Jun 18, 2020Updated 5 years ago
Alternatives and similar repositories for StackPPI
Users that are interested in StackPPI are comparing it to the libraries listed below
Sorting:
- De novo molecular design with deep molecular generative models for protein-protein interaction(PPI) inhibitors☆22Nov 6, 2024Updated last year
- ☆19Aug 6, 2019Updated 6 years ago
- A deep learning model to predict anticancer peptides.☆24Jul 10, 2019Updated 6 years ago
- ☆69Nov 1, 2022Updated 3 years ago
- A simple adaboost code using decision stumps as weak classifiers☆11Nov 1, 2012Updated 13 years ago
- Predicting drug-target interactions using Lasso with random forest based on evolutionary information and chemical structure☆10Nov 19, 2018Updated 7 years ago
- ☆10Apr 22, 2019Updated 6 years ago
- A potential solution to the early-stage small molecule hit identification☆14Jan 27, 2026Updated last month
- Application of deep generative model discovers novel and diverse functional peptides against microbial resistance☆11Dec 22, 2022Updated 3 years ago
- Duva&Crow (1994) creep model with implemented with Abaqus CREEP subroutine☆12Jun 30, 2023Updated 2 years ago
- ☆13Aug 2, 2021Updated 4 years ago
- ☆10Dec 4, 2021Updated 4 years ago
- Implementation of PSO Algorithm to Optimize SVM☆11May 18, 2019Updated 6 years ago
- TF-DNA-binding assay analysis pipeline☆12Aug 25, 2020Updated 5 years ago
- Program for finding horizontal gene transfer using BLAST result☆11May 26, 2023Updated 2 years ago
- Python code to generate zero thickness cohesive interface elements (COH2D4) in Abaqus☆15Nov 25, 2021Updated 4 years ago
- An ABAQUS Plug-in to insert cohesive elements☆13Jun 17, 2022Updated 3 years ago
- ☆13Dec 14, 2023Updated 2 years ago
- ☆11Aug 5, 2020Updated 5 years ago
- ☆13May 28, 2025Updated 9 months ago
- A network-based method for brain disease gene prediction by integrating brain connectome and molecular network☆10Jul 5, 2022Updated 3 years ago
- SG-EDNE: Skip-Gram based Ensembles Dynamic Network Embedding (for our paper "Robust Dynamic Network Embedding via Ensembles")☆10Oct 4, 2021Updated 4 years ago
- This program is developed based on the invariant level set method (I-LSM) to extract the fracture geometry simulated by XFEM in ABAQUS.☆12Jun 11, 2023Updated 2 years ago
- Text mining tool to retrieve protein-protein interactions from the scientific literature.☆13Jun 9, 2019Updated 6 years ago
- Code for paper "ToxIBTL: prediction of peptide toxicity based on information bottleneck and transfer learning"☆13Jan 24, 2022Updated 4 years ago
- A fork of Autodock Vina for DeltaVina scoring function☆10Nov 7, 2016Updated 9 years ago
- Program to create tautomers and ionisation states relevant to physiological pH.☆10May 8, 2017Updated 8 years ago
- 勉強したこと☆12Jun 4, 2017Updated 8 years ago
- DNN-DTIs: improved drug-target interactions prediction using XGBoost feature selection and deep neural network☆12Mar 5, 2021Updated 4 years ago
- Code for the paper "Exploiting Pretrained Biochemical Language Models for Targeted Drug Design", to appear in Bioinformatics, Proceedings…☆17Feb 26, 2024Updated 2 years ago
- OPUS-TASS: A Protein Backbone Torsion Angles and Secondary Structure Predictor Based on Ensemble Neural Networks☆10Jul 9, 2020Updated 5 years ago
- Ultrafast method to compute single-sample gene set enrichment scores for gene expression or proteomics data☆20Feb 10, 2026Updated 2 weeks ago
- Dock Multiple Ligands with AutoDock Vina with one Command☆11Jan 10, 2018Updated 8 years ago
- Particle Swarm Optimization Least-squares support-vector machine without any machine learning libraries☆10Aug 31, 2020Updated 5 years ago
- Open source library to work with molecular systems☆13Feb 17, 2026Updated last week
- Compare Naive Bayes, SVM, XGBoost, Bagging, AdaBoost, K-Nearest Neighbors, Random Forests for classification of Malaria Cells☆11Jun 5, 2019Updated 6 years ago
- A little simple blog for my python practice.☆10Jul 6, 2022Updated 3 years ago
- ☆14Jan 24, 2021Updated 5 years ago
- Package for testing abaqus user element subroutines for implementing cohesive zone models☆12Oct 28, 2021Updated 4 years ago