QUST-AIBBDRC / StackPPILinks
Improving protein-protein interactions prediction accuracy using XGBoost feature selection and stacked ensemble classifier
☆12Updated 5 years ago
Alternatives and similar repositories for StackPPI
Users that are interested in StackPPI are comparing it to the libraries listed below
Sorting:
- Python package for peptide sequence generation, peptide descriptor calculation and sequence analysis.☆61Updated 6 months ago
- ☆23Updated 4 years ago
- HydrAMP: a deep generative model for antimicrobial peptide discovery☆51Updated 10 months ago
- A Python 3 version of the protein descriptor package propy☆46Updated 2 years ago
- A Motif-Based PPI Searching Pipeline for PPI Mining and Protein Design☆19Updated 7 months ago
- Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python☆30Updated 2 years ago
- Machine learning models for antibody sequences in PyTorch☆41Updated 4 years ago
- Generates consistent PSSM and/or PDB files for protein-protein complexes☆20Updated 3 years ago
- iLearn, a Python Toolkit and Web Server Integrating the Functionality of Feature Calculation, Extraction, Clustering, Feature Selection, …☆84Updated 3 years ago
- Long short-term memory recurrent neural networks for learning peptide and protein sequences to later design new, similar examples.☆77Updated 2 years ago
- A foundation model approach to guide antimicrobial peptide design in the era of artificial intelligence driven scientific discovery☆38Updated last month
- Generator and regressor neural networks for antimicrobial peptides☆25Updated last year
- Geometry-aware protein binding site predictor☆24Updated last year
- GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures☆61Updated last year
- A PyMOL Plugin for calculating docking box for LeDock, AutoDock and AutoDock Vina.☆101Updated 6 years ago
- PyMOL extension to color AlphaFold structures by confidence (pLDDT).☆112Updated last year
- Python package for analysis of antibody heavy and light chains☆25Updated 5 years ago
- Neural networks for deep mutational scanning data☆69Updated 4 months ago
- NetSurfP 3.0: Protein secondary structure and relative solvent accessibility prediction☆23Updated 2 years ago
- Source code for fitting thermodynamic models (MoCHI), downstream analyses and to reproduce all figures in the following publication: Mapp…☆21Updated 2 years ago
- HoTS: Sequence-based prediction of binding regions and drug-target interactions.☆28Updated 2 years ago
- ☆42Updated last month
- A Python-based Effective Feature Generation Tool from DNA, RNA, and Protein Sequences☆97Updated 3 years ago
- A software package for computing features of peptides and proteins☆64Updated last year
- Collecting AMP MIC data from different sources, then running a GAN to output promising sequences☆80Updated last year
- ☆53Updated last month
- DeepAAI☆35Updated 9 months ago
- A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions☆104Updated 3 weeks ago
- Computer aided proximal decaging as a universal strategy for temporal protein activation☆24Updated 4 months ago
- python script that picks suitable targets for siRNA with off-target optimization☆17Updated 3 years ago