QUST-AIBBDRC / StackPPILinks
Improving protein-protein interactions prediction accuracy using XGBoost feature selection and stacked ensemble classifier
☆12Updated 5 years ago
Alternatives and similar repositories for StackPPI
Users that are interested in StackPPI are comparing it to the libraries listed below
Sorting:
- Geometric deep learning of protein–DNA binding specificity☆76Updated 9 months ago
- Machine learning models for antibody sequences in PyTorch☆41Updated 4 years ago
- Python package for peptide sequence generation, peptide descriptor calculation and sequence analysis.☆61Updated 9 months ago
- Collecting AMP MIC data from different sources, then running a GAN to output promising sequences☆86Updated last year
- GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures☆61Updated last year
- Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python☆30Updated 2 years ago
- Download pdb/protein structures using Uniprot id; This script will download related PDB files, extract chains(Optional), remove duplicate…☆46Updated last year
- iLearn, a Python Toolkit and Web Server Integrating the Functionality of Feature Calculation, Extraction, Clustering, Feature Selection, …☆84Updated 3 years ago
- PyMOL extension to color AlphaFold structures by confidence (pLDDT).☆117Updated last year
- A Python 3 version of the protein descriptor package propy☆46Updated 2 years ago
- ☆22Updated 2 years ago
- A software package for computing features of peptides and proteins☆65Updated last year
- NetSurfP 3.0: Protein secondary structure and relative solvent accessibility prediction☆24Updated 2 years ago
- RaptorX-Property: a Standalone Package for Protein Structure Property Prediction☆19Updated 6 years ago
- Generator and regressor neural networks for antimicrobial peptides☆25Updated last year
- Geometry-aware protein binding site predictor☆25Updated last year
- Generates consistent PSSM and/or PDB files for protein-protein complexes☆20Updated 3 years ago
- DeepAAI☆35Updated last year
- RNA 3D structure prediction using multiple sequence alignment information docs @ http://EvoClustRNA.rtfd.io☆14Updated 3 years ago
- Long short-term memory recurrent neural networks for learning peptide and protein sequences to later design new, similar examples.☆77Updated 2 years ago
- A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions☆106Updated last week
- This repository contains the stand-alone tool for MusiteDeep server☆35Updated 5 years ago
- contrastive learning and pre-trained encoder for protein-ligand binding sites prediction☆36Updated 5 months ago
- iFeatureOmega is a comprehensive platform for generating, analyzing and visualizing more than 170 representations for biological sequence…☆32Updated 2 years ago
- ☆17Updated last year
- A Python-based Effective Feature Generation Tool from DNA, RNA, and Protein Sequences☆97Updated 3 years ago
- HydrAMP: a deep generative model for antimicrobial peptide discovery☆56Updated last year
- Quantifying the nativeness of antibody sequences using long short-term memory networks☆18Updated 4 years ago
- iLearnPlus is the first machine-learning platform with both graphical- and web-based user interface that enables the construction of auto…☆121Updated last year
- The MolE pre-training framework to learn general molecular representations from unlabeled structures☆12Updated 7 months ago