Graph Network for protein-protein interface
☆122Mar 22, 2024Updated 2 years ago
Alternatives and similar repositories for Deeprank-GNN
Users that are interested in Deeprank-GNN are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Fast and versatile biomolecular structure PDB file parser using SQL queries☆24Mar 17, 2023Updated 3 years ago
- This repository has been integrated in https://github.com/DeepRank/deeprank2☆147Nov 28, 2023Updated 2 years ago
- ☆118Dec 7, 2022Updated 3 years ago
- Code for "Protein Docking Model Evaluation by Graph Neural Networks"☆59May 12, 2023Updated 3 years ago
- EquiBind: geometric deep learning for fast predictions of the 3D structure in which a small molecule binds to a protein☆543Feb 19, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A dependency-free cross-platform swiss army knife for PDB files.☆453May 15, 2026Updated last week
- Generates consistent PSSM and/or PDB files for protein-protein complexes☆20Jun 26, 2022Updated 3 years ago
- Evaluating Protein Binding Interfaces with Transformer Networks☆46Oct 24, 2023Updated 2 years ago
- ☆12Dec 2, 2024Updated last year
- Protein Graph Library☆1,172May 14, 2026Updated last week
- HiCOPS: Computational framework for peptide identification from MS data through accelerated database search☆10Mar 24, 2023Updated 3 years ago
- MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.☆754Jun 19, 2024Updated last year
- Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm☆392Sep 16, 2025Updated 8 months ago
- ☆10Mar 10, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- open source repository☆149Nov 30, 2023Updated 2 years ago
- De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds☆188Apr 21, 2024Updated 2 years ago
- Structure-conditioned masked language modeling for protein sequence design☆74Jan 31, 2024Updated 2 years ago
- Versatile computational pipeline for processing protein structure data for deep learning applications.☆279Feb 14, 2024Updated 2 years ago
- Supporting repository for "Protein language models trained on multiple sequence alignments learn phylogenetic relationships" (https://www…☆17Jan 17, 2025Updated last year
- Some scripts that I keep using over and over.☆21Jul 5, 2025Updated 10 months ago
- Implementation of DiffDock-PP: Rigid Protein-Protein Docking with Diffusion Models in PyTorch (ICLR 2023 - MLDD Workshop)☆235Dec 29, 2023Updated 2 years ago
- ☆35Dec 15, 2023Updated 2 years ago
- Code for our paper "Protein sequence design with a learned potential"☆83Sep 8, 2023Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions☆173Dec 24, 2023Updated 2 years ago
- Graph Network for protein-protein interface including language model features☆34Mar 26, 2024Updated 2 years ago
- Database of Interacting Protein Structures (DIPS)☆105Jan 26, 2024Updated 2 years ago
- EquiDock: geometric deep learning for fast rigid 3D protein-protein docking☆257Sep 22, 2023Updated 2 years ago
- Application to assign secondary structure to proteins☆262Apr 21, 2026Updated last month
- AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By add…☆117May 11, 2026Updated last week
- RoseTTAFold2 protein/nucleic acid complex prediction☆380Jun 3, 2024Updated last year
- MoleculeKit: Your favorite molecule manipulation kit☆236May 15, 2026Updated last week
- a protein descriptor for site prediction☆16Aug 9, 2019Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ATOM3D: tasks on molecules in three dimensions☆320Mar 2, 2023Updated 3 years ago
- Antibody-Antigen Docking and Affinity Benchmark☆78Nov 17, 2020Updated 5 years ago
- GearNet and Geometric Pretraining Methods for Protein Structure Representation Learning, ICLR'2023 (https://arxiv.org/abs/2203.06125)☆319Jun 13, 2025Updated 11 months ago
- Computes a molecular graph for protein structures.☆59May 11, 2026Updated last week
- Differentiable Markov Chain Monte Carlo☆15Mar 23, 2024Updated 2 years ago
- Generative diverse protein backbones by protein language model☆35Feb 27, 2026Updated 2 months ago
- Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity☆58Jul 9, 2025Updated 10 months ago