Alternatives and similar repositories for Equi-RC

Users that are interested in Equi-RC are comparing it to the libraries listed below

• genedisco / genedisco
  GeneDisco is a benchmark suite for evaluating active learning algorithms for experimental design in drug discovery.
  ☆40Updated 2 years ago
• liudan111 / PLM-interact
  PLM-interact: extending protein language models to predict protein-protein interactions.
  ☆53Updated 4 months ago
• gcorso / NeuroSEED
  Implementation of Neural Distance Embeddings for Biological Sequences (NeuroSEED) in PyTorch (NeurIPS 2021)
  ☆73Updated 2 years ago
• leojklarner / Q-SAVI
  Drug Discovery under Covariate Shift with Domain-Informed Prior Distributions over Functions
  ☆24Updated 2 years ago
• aedera / anc2vec
  Unsupervised neural network for learning embeddings of GO terms.
  ☆20Updated 3 years ago
• EleutherAI / mp_nerf
  Massively-Parallel Natural Extension of Reference Frame
  ☆33Updated 2 years ago
• johli / scrambler
  Interpretation by Deep Generative Masking for Biological Sequences
  ☆37Updated 4 years ago
• cgoliver / rnaglib
  Toolkit for structure-based deep learning on RNA.
  ☆44Updated last month
• ZhangGroup-MITChemistry / DRAGON
  ☆12Updated 2 years ago
• Genentech / walk-jump
  Official repository for discrete Walk-Jump Sampling (dWJS)
  ☆55Updated 2 years ago
• ml-jku / cloome
  ☆36Updated last year
• sokrypton / seqmodels
  ☆32Updated 3 months ago
• aqlaboratory / hsm
  Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."
  ☆70Updated last year
• OpenBioML / protein-lm-scaling
  ☆58Updated last year
• jzhoulab / ddsm
  Dirichlet Diffusion Score Model for Biological Sequence Generation.
  ☆63Updated 10 months ago
• AlanNawzadAmin / CloneBO
  ☆15Updated 6 months ago
• KrishnaswamyLab / ReLSO-Guided-Generative-Protein-Design-using-Regularized-Transformers
  a Transformer-based neural network for generating highly optimized protein sequences called Regularized Latent Space Optimization (RELSO)
  ☆90Updated 2 years ago
• MachineLearningLifeScience / meaningful-protein-representations
  ☆111Updated 3 years ago
• TurtleTools / geometricus
  A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.
  ☆41Updated 2 years ago
• xinformatics / alphafold
  Open source code for AlphaFold to extract protein embeddings
  ☆27Updated 4 years ago
• debbiemarkslab / SeqDesign
  Protein design and variant prediction using autoregressive generative models
  ☆117Updated last year
• Doudna-lab / GARNET_DL
  ☆36Updated 11 months ago
• debbiemarkslab / variational-synthesis
  Repository for the paper "Optimal design of stochastic DNA synthesis protocols based on generative sequence models" (Weinstein et al., AI…
  ☆35Updated 3 years ago
• lucidrains / ddpm-ipa-protein-generation
  Implementation of the DDPM + IPA (invariant point attention) for protein generation, as outlined in the paper "Protein Structure and Sequ…
  ☆89Updated 3 years ago
• brianhie / uncertainty
  Learning with uncertainty for biological discovery and design
  ☆34Updated 2 years ago
• jas-preet / SPOT-1D-Single
  The standalone version of SPOT-1D-Single available for public use for research purposes.
  ☆24Updated last year
• mims-harvard / SPECTRA
  SPECTRA: Spectral framework for evaluation of biomedical AI models
  ☆41Updated 9 months ago
• gitter-lab / nn4dms
  Neural networks for deep mutational scanning data
  ☆71Updated 7 months ago
• IBM / fold2seq
  Code for Fold2Seq paper from ICML 2021
  ☆50Updated 3 years ago
• amirmohan / epistatic-net
  Epistatic Net is an algorithm which allows for spectral regularization of deep neural networks to predict biological fitness functions (e…
  ☆18Updated 4 years ago