Alternatives and similar repositories for Equi-RC

Users that are interested in Equi-RC are comparing it to the libraries listed below

• liudan111 / PLM-interact
  PLM-interact: extending protein language models to predict protein-protein interactions.
  ☆29Updated last month
• genedisco / genedisco
  GeneDisco is a benchmark suite for evaluating active learning algorithms for experimental design in drug discovery.
  ☆40Updated 2 years ago
• aedera / anc2vec
  Unsupervised neural network for learning embeddings of GO terms.
  ☆18Updated 3 years ago
• EleutherAI / mp_nerf
  Massively-Parallel Natural Extension of Reference Frame
  ☆32Updated 2 years ago
• leojklarner / Q-SAVI
  Drug Discovery under Covariate Shift with Domain-Informed Prior Distributions over Functions
  ☆24Updated 2 years ago
• daisybio / data-leakage-ppi-prediction
  Code associated with the paper 'Cracking the blackbox of deep sequence-based protein-protein interaction prediction'
  ☆25Updated last year
• aqlaboratory / hsm
  Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."
  ☆70Updated last year
• ZhangGroup-MITChemistry / DRAGON
  ☆12Updated 2 years ago
• gcorso / NeuroSEED
  Implementation of Neural Distance Embeddings for Biological Sequences (NeuroSEED) in PyTorch (NeurIPS 2021)
  ☆73Updated last year
• TurtleTools / geometricus
  A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.
  ☆41Updated 2 years ago
• sokrypton / seqmodels
  ☆32Updated 2 weeks ago
• xinformatics / alphafold
  Open source code for AlphaFold to extract protein embeddings
  ☆27Updated 4 years ago
• ba-lab / pdnet
  PDNET: A fully open-source framework for deep learning protein real-valued distances
  ☆36Updated 4 years ago
• BioComputingUP / AlphaFold-disorder
  Predict disorder and disorder binding from AlphaFold structures
  ☆16Updated 10 months ago
• jzhoulab / ddsm
  Dirichlet Diffusion Score Model for Biological Sequence Generation.
  ☆62Updated 7 months ago
• OpenBioML / protein-lm-scaling
  ☆58Updated last year
• rkruegs123 / jax-rnafold
  Differentiable RNA folding in JAX
  ☆22Updated 6 months ago
• wells-wood-research / alphafold2-multiprocessing
  Use AlphaFold by Deep Mind in Batch Mode + Multiprocessing
  ☆23Updated 4 years ago
• AlanNawzadAmin / CloneBO
  ☆15Updated 3 months ago
• aqlaboratory / pnerf
  ☆36Updated 6 years ago
• alrojo / UniLanguage
  Homology reduced UniProt, train-/valid-/testsets for language modeling
  ☆16Updated 3 years ago
• Genentech / walk-jump
  Official repository for discrete Walk-Jump Sampling (dWJS)
  ☆53Updated last year
• johli / scrambler
  Interpretation by Deep Generative Masking for Biological Sequences
  ☆37Updated 3 years ago
• MachineLearningLifeScience / meaningful-protein-representations
  ☆110Updated 3 years ago
• navid-naderi / PLM_SWE
  Implementation code for the paper "Aggregating Residue-Level Protein Language Model Embeddings with Optimal Transport"
  ☆21Updated 5 months ago
• cgoliver / rnaglib
  Toolkit for structure-based deep learning on RNA.
  ☆40Updated 2 weeks ago
• debbiemarkslab / SeqDesign
  Protein design and variant prediction using autoregressive generative models
  ☆112Updated last year
• mims-harvard / SPECTRA
  SPECTRA: Spectral framework for evaluation of biomedical AI models
  ☆41Updated 7 months ago
• Doudna-lab / GARNET_DL
  ☆36Updated 8 months ago
• jas-preet / SPOT-1D-Single
  The standalone version of SPOT-1D-Single available for public use for research purposes.
  ☆24Updated last year