☆16Jul 13, 2022Updated 3 years ago
Alternatives and similar repositories for benchmark_eval
Users that are interested in benchmark_eval are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- E(3) equivariant graph neural network for PPI site prediction☆11Sep 18, 2023Updated 2 years ago
- ☆22May 31, 2023Updated 2 years ago
- Benchmarking Pipeline for Prediction of Protein-Protein Interactions☆14Feb 7, 2022Updated 4 years ago
- Bioinformatics with R cookbook☆12Apr 3, 2019Updated 7 years ago
- Fraction of Common Contacts Clustering Algorithm for Protein Structures☆27Aug 12, 2021Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Protein-protein interacting site predictor using deep graph convolutional network☆11Jan 3, 2023Updated 3 years ago
- Code associated with the paper 'Cracking the blackbox of deep sequence-based protein-protein interaction prediction'☆31Jan 8, 2024Updated 2 years ago
- ProtVec can be used in protein interaction predictions, structure prediction, and protein data visualization.☆34Dec 8, 2022Updated 3 years ago
- ProtT5 (Transformer) embeddings used for residue wise disorder prediction in proteins☆11Mar 11, 2024Updated 2 years ago
- DeepAAI☆36Dec 25, 2024Updated last year
- Predicts if Protein will reside in the protein corona on the surface of engineered nanomaterials☆12Jun 21, 2022Updated 3 years ago
- An interpretable machine learning algorithm to predict disordered protein phase separation based on biophysical interactions☆13Apr 10, 2026Updated last month
- This is the repository for PIPR. This repository contains the source code and links to some datasets used in the ISMB/ECCB-2019 paper "Mu…☆112Jan 14, 2023Updated 3 years ago
- Ultrafast method to compute single-sample gene set enrichment scores for gene expression or proteomics data☆24May 2, 2026Updated 2 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- TF-DNA-binding assay analysis pipeline☆15Aug 25, 2020Updated 5 years ago
- This repository contains scripts, data and jupyter notebooks used to produce the evaluation results in the BioPhi 2021 publication☆17Jan 2, 2023Updated 3 years ago
- ☆15Sep 14, 2021Updated 4 years ago
- ☆14Jan 18, 2024Updated 2 years ago
- TUnA: Transformer-based Uncertainty Aware model for PPI Prediction☆17Dec 21, 2025Updated 5 months ago
- a DNA assembly library☆23Aug 13, 2025Updated 9 months ago
- ☆11Dec 7, 2022Updated 3 years ago
- Docking benchmark 5 - cleaned and ready to use for HADDOCK☆14Apr 13, 2026Updated last month
- Modelling the Language of Life - Deep Learning Protein Sequences☆123Sep 15, 2020Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆12Aug 30, 2021Updated 4 years ago
- Scientific Dataset Quality Control and Data Exploration Tool☆22Updated this week
- dsNickFury is for comparing a CRISPR target site against all other potential sites in a genome. Orchid is a package I'm developing to go…☆13Mar 26, 2018Updated 8 years ago
- FunctionaL Omics Processing platform☆13Jul 25, 2024Updated last year
- A hierarchical deep learning framework for ncRNA-protein interaction prediction.☆14Nov 25, 2022Updated 3 years ago
- ☆18Jan 3, 2026Updated 4 months ago
- calculating RMSD between 2 conformers with different atom names☆14Jan 13, 2021Updated 5 years ago
- Critical Assessment of Intrinsic Disorder☆17Aug 11, 2025Updated 9 months ago
- ☆16Jan 5, 2021Updated 5 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Improving protein-protein interactions prediction accuracy using XGBoost feature selection and stacked ensemble classifier☆12Jun 18, 2020Updated 5 years ago
- ☆48Mar 4, 2026Updated 2 months ago
- Predicting dynamic cellular protein-RNA interactions using deep learning and in vivo RNA structure☆68Mar 3, 2024Updated 2 years ago
- SSRMMD: A Rapid and Accurate Algorithm for Mining SSR Feature Loci and Candidate Polymorphic SSRs Based on Assembled Sequences.☆16Sep 2, 2020Updated 5 years ago
- Deep learning protein-protein binding sites prediction☆22Feb 2, 2023Updated 3 years ago
- Function Enrichment analysis and Network construction☆15Apr 25, 2026Updated 3 weeks ago
- Improving protein function prediction with synthetic feature samples created by generative adversarial networks☆22Oct 6, 2020Updated 5 years ago