Transformer for protein function prediction
☆34Oct 24, 2024Updated last year
Alternatives and similar repositories for TransFun
Users that are interested in TransFun are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆57Aug 28, 2024Updated 2 years ago
- ☆17Nov 11, 2022Updated 3 years ago
- ☆14Sep 3, 2024Updated last year
- Deep reinforcement learning for protein complex modeling☆11May 28, 2022Updated 4 years ago
- Transformer for protein function prediction (version 2)☆14Updated this week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Graph Learning of INTER-protein contacts☆11Feb 20, 2022Updated 4 years ago
- InterLabelGO+: Unraveling label correlations in protein function prediction☆16Aug 5, 2025Updated last year
- ☆40Sep 17, 2024Updated last year
- ☆18Jun 13, 2025Updated last year
- Feature map and function annotation of Proteins☆35Jun 13, 2024Updated 2 years ago
- Conversion of PDBx/mmCIF files to best effort/minimal PDB files☆24Nov 1, 2024Updated last year
- ☆62Sep 11, 2024Updated last year
- Trainable representation analysis study repository☆44Apr 5, 2022Updated 4 years ago
- ☆24Nov 6, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆13Apr 18, 2022Updated 4 years ago
- Domain-PFP is a self-supervised method to predict protein functions from the domains☆13Nov 1, 2023Updated 2 years ago
- This repository contains a set of scripts for performing singular value decomposition on protein multiple sequence alignments, and analyz…☆11Aug 12, 2024Updated 2 years ago
- ☆16May 10, 2022Updated 4 years ago
- Full-length protein structure determination from cryo-EM maps using deep learning☆15May 28, 2023Updated 3 years ago
- Protein Sequence Design with Deep Learning and Tooling like Monte Carlo Sampling and Analysis☆62Oct 28, 2025Updated 10 months ago
- ☆12Dec 2, 2024Updated last year
- NLP for Proteins - A paper collection☆13Sep 10, 2020Updated 5 years ago
- ☆12Nov 22, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Contrastive learning of protein representations with graph neural networks for structural and functional annotations☆11Apr 23, 2023Updated 3 years ago
- ☆71Mar 18, 2026Updated 5 months ago
- Official implementation of NeurIPS'24 paper "Bridge-IF: Learning Inverse Protein Folding with Markov Bridges"☆18Mar 16, 2025Updated last year
- ☆27Sep 21, 2023Updated 2 years ago
- Multimodal encoder-only transformer model for image-based protein predictions☆15Dec 12, 2023Updated 2 years ago
- This is an official implementation for "MMSite: A Multi-modal Framework for the Identification of Active Sites in Proteins".☆19Jan 4, 2025Updated last year
- Repository for Fast Non-autoregressive Inverse Folding with Discrete Diffusion☆19Feb 8, 2024Updated 2 years ago
- LM-GVP: A Generalizable Deep Learning Framework for Protein Property Prediction from Sequence and Structure☆66Mar 4, 2024Updated 2 years ago
- Ligand-binding site classification with deep graph neural networks.☆10Sep 24, 2023Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Prediction of binding residues for metal ions, nucleic acids, and small molecules.☆37Sep 2, 2025Updated last year
- 🧬 Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2…☆97Jul 20, 2026Updated last month
- contrastive learning and pre-trained encoder for protein-ligand binding sites prediction☆37Jul 4, 2025Updated last year
- Python package for AAIndex databases (https://www.genome.jp/aaindex/)☆15Aug 7, 2026Updated 3 weeks ago
- DeepGO with GOPlus axioms☆104Oct 23, 2025Updated 10 months ago
- DeepGO with Fuzzy DL☆34Sep 19, 2022Updated 3 years ago
- NodeCoder is a general framework based on graph convolutional neural network for protein function prediction.☆33Aug 11, 2026Updated 3 weeks ago