Transformer for protein function prediction
☆34Oct 24, 2024Updated last year
Alternatives and similar repositories for TransFun
Users that are interested in TransFun are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆57Aug 28, 2024Updated 2 years ago
- ☆17Nov 11, 2022Updated 3 years ago
- ☆14Sep 3, 2024Updated 2 years ago
- Deep reinforcement learning for protein complex modeling☆11May 28, 2022Updated 4 years ago
- Transformer for protein function prediction (version 2)☆14Aug 31, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Graph Learning of INTER-protein contacts☆11Feb 20, 2022Updated 4 years ago
- InterLabelGO+: Unraveling label correlations in protein function prediction☆16Aug 5, 2025Updated last year
- ☆40Sep 17, 2024Updated 2 years ago
- Code and data for the ACL2024 paper "InstructProtein: Aligning Human and Protein Language via Knowledge Instruction".☆24Aug 28, 2024Updated 2 years ago
- ☆18Jun 13, 2025Updated last year
- Feature map and function annotation of Proteins☆35Jun 13, 2024Updated 2 years ago
- Conversion of PDBx/mmCIF files to best effort/minimal PDB files☆24Nov 1, 2024Updated last year
- ☆63Sep 11, 2024Updated 2 years ago
- Trainable representation analysis study repository☆44Apr 5, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆25Nov 6, 2024Updated last year
- ☆13Apr 18, 2022Updated 4 years ago
- Domain-PFP is a self-supervised method to predict protein functions from the domains☆13Nov 1, 2023Updated 2 years ago
- This repository contains a set of scripts for performing singular value decomposition on protein multiple sequence alignments, and analyz…☆11Aug 12, 2024Updated 2 years ago
- ☆16May 10, 2022Updated 4 years ago
- Full-length protein structure determination from cryo-EM maps using deep learning☆15May 28, 2023Updated 3 years ago
- Protein Sequence Design with Deep Learning and Tooling like Monte Carlo Sampling and Analysis☆62Oct 28, 2025Updated 10 months ago
- ☆12Dec 2, 2024Updated last year
- NLP for Proteins - A paper collection☆13Sep 10, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆12Nov 22, 2024Updated last year
- Contrastive learning of protein representations with graph neural networks for structural and functional annotations☆11Apr 23, 2023Updated 3 years ago
- ☆71Mar 18, 2026Updated 6 months ago
- Official implementation of NeurIPS'24 paper "Bridge-IF: Learning Inverse Protein Folding with Markov Bridges"☆18Mar 16, 2025Updated last year
- ☆27Sep 21, 2023Updated 3 years ago
- Multimodal encoder-only transformer model for image-based protein predictions☆15Dec 12, 2023Updated 2 years ago
- This is an official implementation for "MMSite: A Multi-modal Framework for the Identification of Active Sites in Proteins".☆19Jan 4, 2025Updated last year
- Repository for Fast Non-autoregressive Inverse Folding with Discrete Diffusion☆19Feb 8, 2024Updated 2 years ago
- LM-GVP: A Generalizable Deep Learning Framework for Protein Property Prediction from Sequence and Structure☆67Mar 4, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Ligand-binding site classification with deep graph neural networks.☆10Sep 24, 2023Updated 2 years ago
- Prediction of binding residues for metal ions, nucleic acids, and small molecules.☆37Sep 2, 2025Updated last year
- 🧬 Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2…☆97Jul 20, 2026Updated 2 months ago
- contrastive learning and pre-trained encoder for protein-ligand binding sites prediction☆37Jul 4, 2025Updated last year
- Python package for AAIndex databases (https://www.genome.jp/aaindex/)☆15Aug 7, 2026Updated last month
- DeepGO with GOPlus axioms☆103Oct 23, 2025Updated 10 months ago
- DeepGO with Fuzzy DL☆34Sep 19, 2022Updated 4 years ago