ohuelab / SpatialPPIv2Links
SpatialPPIv2: Enhancing protein–protein interaction prediction through graph neural networks with protein language models.
☆22Updated 4 months ago
Alternatives and similar repositories for SpatialPPIv2
Users that are interested in SpatialPPIv2 are comparing it to the libraries listed below
Sorting:
- TUnA: Transformer-based Uncertainty Aware model for PPI Prediction☆13Updated last week
- ☆33Updated 6 months ago
- Predicting mutational effects on protein binding from folding energy. ICML 2025.☆36Updated 4 months ago
- Structure-conditioned masked language modeling for protein sequence design☆69Updated last year
- This repository implements Gibbs sampling with Graph-based Smoothing☆40Updated last year
- 🧬 Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2…☆79Updated 7 months ago
- Predicting mutational effects on protein-protein binding via a side-chain diffusion probabilistic model (NeurIPS 2023 Poster)☆37Updated 2 years ago
- Contrastive fitness learning: Reprogramming protein language models for low-N learning of protein fitness landscape☆35Updated 3 weeks ago
- A 3D-equivariant neural network for protein structure accuracy estimation☆20Updated 2 years ago
- Tool for modelling the CDRs of antibodies☆33Updated 3 years ago
- ☆84Updated 7 months ago
- ☆35Updated last week
- Implementation code for the paper "Aggregating Residue-Level Protein Language Model Embeddings with Optimal Transport"☆22Updated 7 months ago
- Versatile human antibody sequence design☆21Updated 7 months ago
- Extension of ThermoMPNN for double mutant predictions☆50Updated 2 months ago
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆64Updated 7 months ago
- KA-Search: Rapid and exhaustive sequence identity search of known antibodies☆23Updated last year
- Code for ICML 2023 paper "Reprogramming Pretrained Language Models for Antibody Sequence Infilling"☆24Updated 3 months ago
- Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)☆47Updated last year
- ☆20Updated last year
- ☆16Updated 10 months ago
- Efficient implementatin of ESM family.☆78Updated 3 months ago
- FrameDiPT: an SE(3) diffusion model for protein structure inpainting☆58Updated last year
- ISMB-24/Bioinformatics: Tertiary Structure-based RNA Inverse Folding with Generative Diffusion Models☆51Updated last year
- ProteusAI is a library for the machine learning driven engineering of proteins. The library enables workflows from protein structure pred…☆66Updated 3 months ago
- This is the official code repository for the paper FLOP: Tasks for Fitness Landscapes Of Protein wildtypes by Groth et al.☆22Updated 2 years ago
- PLM-interact: extending protein language models to predict protein-protein interactions.☆53Updated 4 months ago
- ☆39Updated last year
- Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.☆98Updated last year
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆87Updated last year