Alternatives and similar repositories for FPbase:

Users that are interested in FPbase are comparing it to the libraries listed below

• oanegros / Blender_for_Biologists_2023
  ☆38Updated 6 months ago
• Jhsmit / ColiCoords
  Single-cell fluorescence microscopy data analysis
  ☆26Updated 3 years ago
• AndrewGYork / high_na_single_objective_lightsheet
  Parts list and build instructions for our high-numerical-aperture lightsheet. Read the publication here: https://andrewgyork.github.io/hi…
  ☆22Updated 7 months ago
• cytomining / pycytominer
  Python package for processing image-based profiling data
  ☆85Updated last week
• soft-matter / pims_nd2
  Python nd2 reader based on the ND2 SDK
  ☆16Updated 3 years ago
• vanTeeffelenLab / ExTrack
  ExTrack MLE for diffusive noisy single-particle tracks
  ☆12Updated 2 weeks ago
• kjamartens / TARDIS-public
  Public releases of TARDIS
  ☆11Updated 11 months ago
• CellMigrationLab / CellTracksColab
  A platform for compiling, analyzing, and exploring tracking data
  ☆42Updated 3 weeks ago
• Open-Science-Tools / nd2reader
  Pure Python library for reading NIS Elements ND2 images and metadata
  ☆45Updated 2 weeks ago
• kreshuklab / go-nuclear
  Guides and code for 3D nuclear instance segmentation
  ☆20Updated 2 weeks ago
• bioimagebook / bioimagebook.github.io
  An introduction to bioimage analysis - http://bioimagebook.github.io
  ☆65Updated 6 months ago
• sofroniewn / napari-training-course
  Lectures for a napari training course
  ☆50Updated last year
• guiwitz / neubias_academy_biapy
  NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter
  ☆62Updated last year
• Kapoorlabs-CAPED / VollSeg
  Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…
  ☆33Updated last month
• haesleinhuepf / napari-skimage-regionprops
  Feature extraction for labeled objects in images using regionprops from scikit-image
  ☆50Updated 3 months ago
• COBA-NIH / MicroscopyForBeginnersReferenceGuide
  A Beginner's guide to microscopy, from sample prep to acquisition, image analysis, and data interpretation
  ☆14Updated 6 months ago
• NEUBIAS / training-resources
  Resources for teaching/preparing to teach bioimage analysis
  ☆52Updated this week
• hinderling / napari_pixel_classifier
  An Ilastik-like interactive pixel classifier.
  ☆16Updated 4 months ago
• rosalindfranklininstitute / RedLionfish
  ☆29Updated 10 months ago
• BiAPoL / napari-clusters-plotter
  A napari plugin for clustering objects according to their properties.
  ☆82Updated this week
• rahi-lab / YeaZ-GUI
  An interactive tool for segmenting yeast cells using deep learning.
  ☆27Updated 10 months ago
• tlambert03 / ome-types
  native Python dataclasses for the OME data model
  ☆55Updated last week
• bioimage-io / bioimageio-chatbot
  Your Personal Assistant in Computational Bioimaging.
  ☆38Updated 2 months ago
• FPvisualization / fpvisualization.github.io
  Visualization of fluorescent protein properties with d3.js. Obsolete.
  ☆12Updated 10 months ago
• DrHanLim / EzColocalization
  ☆10Updated 4 years ago
• TheJacksonLaboratory / ezomero
  A module with convenience functions for writing Python code that interacts with OMERO.
  ☆40Updated 3 months ago
• kalekundert / wellmap
  File format for 96-well plate layouts.
  ☆21Updated last year
• OakesLab / AFT-Alignment_by_Fourier_Transform
  ☆16Updated 6 months ago
• aelefebv / Mitometer
  Automated mitochondrial segmentation and tracking.
  ☆30Updated 3 years ago
• lowe-lab-ucl / arboretum
  Track and lineage visualization with btrack and Napari
  ☆44Updated 3 months ago