Alternatives and similar repositories for SparsePro

Users that are interested in SparsePro are comparing it to the libraries listed below

• lcrawlab / BANNs
  Code and simulations using biologically annotated neural networks
  ☆22Updated 4 years ago
• zhwm / RSparsePro_LD
  RSparsePro for robust fine-mapping in the presence of LD mismatch
  ☆15Updated last year
• mancusolab / sushie
  Software to perform multi-ancestry SNP fine-mapping on molecular data
  ☆29Updated last month
• xinhe-lab / ctwas
  causal TWAS (cTWAS)
  ☆47Updated last week
• douglasyao / mesc
  Mediated Expression Score Regression (MESC)
  ☆27Updated 2 months ago
• FinucaneLab / gene_features
  ☆36Updated 2 years ago
• FinucaneLab / pops
  ☆88Updated 6 months ago
• richardslab / Ei
  Data and code for the Effector index
  ☆14Updated 5 years ago
• gkichaev / PAINTOR_V3.0
  Fast, integrative fine mapping with functional data
  ☆61Updated 6 years ago
• karltayeb / cafeh
  ☆13Updated 2 years ago
• bogdanlab / focus
  FOCUS: Fine-mapping Of CaUsal gene Sets
  ☆48Updated 2 years ago
• opentargets / genetics-gold-standards
  GWAS gold standards repository
  ☆40Updated 2 years ago
• sriramlab / AutoComplete
  ☆25Updated 3 months ago
• mancusolab / susiepca
  Scalable Ultra-Sparse Bayesian PCA
  ☆31Updated last year
• brielin / Popcorn
  Software for estimating correlation of trait effect sizes across populations
  ☆54Updated 8 months ago
• xqwen / torus
  QTL Discovery using Annotations
  ☆28Updated 3 years ago
• weizhou0 / GATE
  ☆23Updated 2 years ago
• ajaynadig / bhr
  Suite of heritability and genetic correlation estimation tools for exome-sequencing data
  ☆35Updated last month
• robjohnnoble / demon_model
  A deme-based, spatially explicit model of intra-tumour population genetics
  ☆21Updated last year
• joepickrell / fgwas
  Functional genomics and genome-wide association studies
  ☆69Updated 7 years ago
• jmschrei / dragonnfruit
  A method for analyzing scATAC-seq experiments.
  ☆34Updated 7 months ago
• MichelNivard / awesome-complex-trait-genetics
  A list of awesome tools for complex trait genetics.
  ☆82Updated last year
• immunogenomics / IMPACT
  Code for creating cell-type-specific regulatory element annotation files
  ☆19Updated last year
• xqwen / dap
  software package for integrative genetic association analysis
  ☆35Updated 2 years ago
• shz9 / magenpy
  Modeling and Analysis of (Statistical) Genetics data in python
  ☆16Updated 7 months ago
• YosefLab / Cassiopeia
  A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction
  ☆97Updated last month
• stephenslab / mvsusieR
  A new model and algorithm for multivariate Bayesian variable selection regression.
  ☆23Updated last month
• natsuhiko / rasqual
  Robust Allele Specific Quantification and quality controL
  ☆40Updated 4 years ago
• MalteThodberg / awesome-multitrait-gwas
  List of software packages for multi-trait / multiple-trait / multivariate / high-dimensional GWAS
  ☆31Updated last month
• stanleyn / Comp790-166-Comp-Bio
  Computational Biology- Spring 2021
  ☆48Updated 4 years ago