Alternatives and similar repositories for SparsePro

Users that are interested in SparsePro are comparing it to the libraries listed below

• douglasyao / mesc
  Mediated Expression Score Regression (MESC)
  ☆26Updated 3 years ago
• richardslab / Ei
  Data and code for the Effector index
  ☆14Updated 4 years ago
• FinucaneLab / gene_features
  ☆33Updated last year
• karltayeb / cafeh
  ☆13Updated 2 years ago
• mancusolab / susiepca
  Scalable Ultra-Sparse Bayesian PCA
  ☆29Updated last year
• zhwm / RSparsePro_LD
  RSparsePro for robust fine-mapping in the presence of LD mismatch
  ☆12Updated 9 months ago
• FinucaneLab / pops
  ☆82Updated 3 weeks ago
• mancusolab / sushie
  Software to perform multi-ancestry SNP fine-mapping on molecular data
  ☆26Updated this week
• xinhe-lab / ctwas
  causal TWAS (cTWAS)
  ☆44Updated this week
• MalteThodberg / awesome-multitrait-gwas
  List of software packages for multi-trait / multiple-trait / multivariate / high-dimensional GWAS
  ☆31Updated 3 months ago
• opentargets / genetics-gold-standards
  GWAS gold standards repository
  ☆37Updated last year
• gkichaev / PAINTOR_V3.0
  Fast, integrative fine mapping with functional data
  ☆60Updated 5 years ago
• xqwen / torus
  QTL Discovery using Annotations
  ☆25Updated 2 years ago
• natsuhiko / rasqual
  Robust Allele Specific Quantification and quality controL
  ☆40Updated 3 years ago
• Yves-CHEN / DENTIST
  DENTIST (Detecting Errors iN analyses of summary staTISTics) is a QC tool for summary-data-based analyses.
  ☆26Updated last year
• ajaynadig / bhr
  Suite of heritability and genetic correlation estimation tools for exome-sequencing data
  ☆34Updated 5 months ago
• bogdanlab / focus
  FOCUS: Fine-mapping Of CaUsal gene Sets
  ☆46Updated last year
• jmschrei / dragonnfruit
  A method for analyzing scATAC-seq experiments.
  ☆33Updated last month
• opentargets / genetics-colocalisation
  Colocalisation pipeline for Open Targets Genetics
  ☆17Updated 3 years ago
• robjohnnoble / demon_model
  A deme-based, spatially explicit model of intra-tumour population genetics
  ☆21Updated 6 months ago
• shz9 / magenpy
  Modeling and Analysis of (Statistical) Genetics data in python
  ☆16Updated 2 months ago
• joepickrell / fgwas
  Functional genomics and genome-wide association studies
  ☆67Updated 7 years ago
• ziadbkh / eQTLHap
  eQTLHap: a comprehensive eQTL analysis tool.
  ☆11Updated 4 years ago
• MyersGroup / ANCHOR
  An statistical approach leveraging segments of distinct ancestries within individuals to estimate similarity in underlying causal effect …
  ☆12Updated 10 months ago
• brielin / Popcorn
  Software for estimating correlation of trait effect sizes across populations
  ☆47Updated 2 months ago
• yanglab-emory / TIGAR
  ☆21Updated 4 months ago
• immunogenomics / IMPACT
  Code for creating cell-type-specific regulatory element annotation files
  ☆18Updated last year
• aertslab / CREsted
  CREsted is a Python package for training sequence-based deep learning models on scATAC-seq data, for capturing enhancer code and for desi…
  ☆43Updated this week
• stephenslab / mvsusieR
  A new model and algorithm for multivariate Bayesian variable selection regression.
  ☆21Updated last year
• fauman / EGEA
  Every Gene Ever Annotated in published GWAS
  ☆48Updated 2 years ago