Alternatives and similar repositories for WES.WGS

Users that are interested in WES.WGS are comparing it to the libraries listed below

• JonSulc / PolyMR

  View on GitHub
  Polynomial Mendelian randomization for the inference of non-linear causal effects
  ☆14Apr 20, 2023Updated 2 years ago
• ZikunY / CARMA

  View on GitHub
  GWAS genetics Fine-mapping method
  ☆26Oct 16, 2024Updated last year
• explodecomputer / random-metal

  View on GitHub
  Adding random effects model to the METAL software
  ☆15Jun 11, 2023Updated 2 years ago
• richardslab / Ei

  View on GitHub
  Data and code for the Effector index
  ☆14Oct 13, 2020Updated 5 years ago
• covid19-hg / covid19_sequencing

  View on GitHub
  As part of the COVID-19 Host Genetics Global initative, this repo serves to corroborate sample scripts for sequencing QC.
  ☆12Jul 30, 2020Updated 5 years ago
• hoffmangroup / polyidus

  View on GitHub
  Polyidus provides a framework to catch chimeric DNA sequences with a tale of python
  ☆10Jul 14, 2023Updated 2 years ago
• Iuliana-Ionita-Laza / CARMA

  View on GitHub
  GWAS genetics Fine-mapping method
  ☆17May 17, 2024Updated last year
• remlapmot / OneSampleMR

  View on GitHub
  R package of useful functions for one-sample Mendelian randomization and instrumental variable analyses
  ☆24Nov 28, 2025Updated 2 months ago
• RitchieLab / GWAS-QC

  View on GitHub
  Quality control steps for GWAS
  ☆26Aug 11, 2023Updated 2 years ago
• EBISPOT / gwas-sumstats-harmoniser

  View on GitHub
  GWAS Summary Statistics Data Harmonisation
  ☆25Jan 7, 2026Updated last month
• ytomofuji / scLinaX

  View on GitHub
  This is a repository of the scLinaX R package developed in the Tomofuji et al (Quantification of escape from X chromosome inactivation wi…
  ☆11Sep 12, 2025Updated 5 months ago
• fusarolimichele / DiAna_package

  View on GitHub
  ☆11Dec 15, 2025Updated 2 months ago
• covid19-hg / META_ANALYSIS

  View on GitHub
  Tools for doing x way meta-analysis
  ☆12Apr 12, 2022Updated 3 years ago
• ilarsf / gwasTools

  View on GitHub
  Basic and fast GWAS functions for QQ and Manhattan plots (incl. gene names)
  ☆33Updated this week
• naumanjaved / fingerprint_maps

  View on GitHub
  Create "haplotype maps" of variants in order to use with Picardtools Crosscheck_Files utility, which allows for robust genotyping of func…
  ☆28Jan 4, 2024Updated 2 years ago
• comorment / containers

  View on GitHub
  CoMorMent-Containers
  ☆36Dec 6, 2025Updated 2 months ago
• ThalesGroup / kessler-game

  View on GitHub
  Kessler is a simulation environment loosely modeled after our internal project PsiBee and the external project Fuzzy Asteroids. The game …
  ☆15Aug 13, 2025Updated 6 months ago
• andreyshabalin / ramwas

  View on GitHub
  RaMWAS: Fast Methylome-Wide Association Study Pipeline for Enrichment Platforms
  ☆10Sep 22, 2021Updated 4 years ago
• Jianhua-Wang / easyfinemap

  View on GitHub
  user-friendly pipeline for GWAS fine-mapping
  ☆12Mar 9, 2025Updated 11 months ago
• jordanero / MultiSuSiE

  View on GitHub
  MultiSuSiE is a multi-ancestry extension of the Sum of Single Effects model
  ☆16Updated this week
• zhwm / SparsePro

  View on GitHub
  A fine-mapping method integrating GWAS summary statistics and functional annotation data
  ☆11Dec 28, 2023Updated 2 years ago
• freeseek / kgp2anc

  View on GitHub
  A protocol to estimate global ancestry starting from raw Illumina data
  ☆11Oct 16, 2019Updated 6 years ago
• vborjesson / TC_hunter

  View on GitHub
  Locate transgenic insertion sites
  ☆11Mar 14, 2023Updated 2 years ago
• HDTian / DRMR

  View on GitHub
  Doubly-Ranked Stratification in Mendelian Randomization
  ☆11Jan 10, 2026Updated last month
• ftwkoopmans / goat

  View on GitHub
  GOAT: efficient and robust identification of gene set enrichment
  ☆14Jan 24, 2026Updated 3 weeks ago
• mglev1n / mrSampleOverlap

  View on GitHub
  Estimate Bias Due To Sample Overlap In Mendelian Randomization Studies
  ☆11Sep 1, 2022Updated 3 years ago
• astrazeneca-cgr-publications / milton-release

  View on GitHub
  MILTON: Disease prediction with biomarkers and augmented PheWAS analyses
  ☆43Sep 20, 2024Updated last year
• anttonalberdi / hilldiv

  View on GitHub
  Integral analysis of diversity based on Hill numbers
  ☆11Feb 8, 2021Updated 5 years ago
• QuentinRougemont / LDhat_workflow

  View on GitHub
  ☆11Mar 4, 2025Updated 11 months ago
• jbpease / mvftools

  View on GitHub
  Multisample Variant Format ToolKit
  ☆10Oct 12, 2021Updated 4 years ago
• PengNi / ccsmethphase

  View on GitHub
  Methylatino phasing using PacBio CCS reads
  ☆14Dec 13, 2024Updated last year
• SigProfilerSuite / SigProfilerPlottingR

  View on GitHub
  An R wrapper for running the SigProfilerPlotting framework
  ☆10Jan 29, 2026Updated 2 weeks ago
• praxosAi / hetairos

  View on GitHub
  Assistant
  ☆19Updated this week
• adefelicibus / soap-hla

  View on GitHub
  SOAP-HLA is a flow of sequencing data analysis pipeline to type all of the HLA genes in IMGT/HLA database using capture sequenced data or…
  ☆10Jun 3, 2020Updated 5 years ago
• damianosmel / GenOtoScope

  View on GitHub
  Automated ACMG/AMP classification for human variants associated with congenital hearing loss
  ☆11May 14, 2025Updated 9 months ago
• mqzhanglab / BSDE

  View on GitHub
  A single-cell RNAseq differential expression analysis approach in case-control study
  ☆10Mar 6, 2022Updated 3 years ago
• c-BIG / NPM-sample-qc

  View on GitHub
  reference implementation of GA4GH WGS Quality Control Standards
  ☆11Nov 25, 2025Updated 2 months ago
• IARCbioinfo / gatk4-GenotypeGVCFs-nf

  View on GitHub
  Joint calling of gVCF, following GATK4 Best Practices
  ☆12Apr 3, 2019Updated 6 years ago
• mglev1n / ldscr

  View on GitHub
  LD Score Regression in R
  ☆51Aug 19, 2025Updated 5 months ago