AlgoLab / rs-vgalignerLinks
Rust implementation of ekg's dozyg
☆9Updated 3 years ago
Alternatives and similar repositories for rs-vgaligner
Users that are interested in rs-vgaligner are comparing it to the libraries listed below
Sorting:
- convert variation graph alignments to coverage maps over nodes☆24Updated 3 weeks ago
- A rust wrapper for the spoa C++ partial order alignment library☆10Updated last month
- GBWT in Rust☆43Updated 3 months ago
- Optimal sequence-to-graph alignment with recombinations☆36Updated 4 months ago
- Iterate over minimizers of a DNA sequence☆31Updated last year
- genome variation graphs constructed from HLA GRCh38 ALTs☆23Updated 3 years ago
- Long read aligner for cyclic and acyclic pangenome graphs☆39Updated last year
- GFA insert into GenomicSQLite☆49Updated 4 years ago
- Rust implementation of Flavia95's GFAtoVCF☆16Updated 3 years ago
- Alignment algorithm for short Illumina reads to a de Bruijn graph☆16Updated 6 years ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆25Updated 2 months ago
- Benchmarking pairwise aligners☆36Updated 5 months ago
- Iterate k-min-mers from a DNA sequence in Rust☆13Updated last year
- Next Index to Query Kmer Intersection☆16Updated 2 years ago
- A FASTA/FASTQ format parser library☆20Updated last year
- ☆16Updated 2 years ago
- Rust crate with bindings and interface to the SPOA library for generating consensus sequences.☆12Updated 6 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated last month
- Fast and exact gap-affine partial order alignment☆52Updated last week
- GBWT-based handle graph☆31Updated 2 weeks ago
- Rust implementation of VG handle graph☆20Updated last year
- Generate random test data for bioinformatics☆26Updated last year
- ☆8Updated 3 years ago
- Refinements of the WFA alignment algorithm with better complexity☆26Updated 3 years ago
- Pangenome Graph Variation Format (PGVF)☆20Updated 4 years ago
- De Bruijn graph construction for large k.☆18Updated 3 years ago
- ☆24Updated 7 months ago
- Long-read aligner to pangenome graphs☆26Updated last year
- Convert HAL to VG☆22Updated 11 months ago
- Rust bindings to the wavefront algorithm C implementation☆18Updated 2 years ago