KechrisLab / SmCCNet
A canonical correlation analysis based method for discovering (quantitative) trait-specific heterogeneous regulatory networks.
☆26Updated 7 months ago
Related projects ⓘ
Alternatives and complementary repositories for SmCCNet
- Time-Course Multi-Omics data integration☆24Updated 7 months ago
- Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens☆22Updated 5 years ago
- GENIE3 (GEne Network Inference with Ensemble of trees) R-package☆27Updated 2 years ago
- Differential Count Data Analysis Toolbox☆60Updated 9 months ago
- Explore and download data from the recount3 project☆31Updated 6 months ago
- processes GoT amplicon data and generates a table of metrics☆26Updated 2 years ago
- An R Package for Geneset Enrichment Workflows☆76Updated 5 months ago
- Single-CELL rna-seq analysis software☆38Updated 7 years ago
- binned motif enrichment analysis and visualisation☆38Updated 3 weeks ago
- Annotation of genomic regions using transcription factor binding sites and epigenetic data☆40Updated 2 years ago
- R package for testing and visualizing gene list overlaps☆18Updated 8 years ago
- ☆53Updated last month
- This package contains a reference-based function to infer the proportions of a priori known cell subtypes present in a sample representin…☆44Updated last week
- Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution☆43Updated last year
- List of software packages for multi-trait / multiple-trait / multivariate / high-dimensional GWAS☆28Updated last week
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆53Updated 3 years ago
- supporting code for the multinomial single cell RNA-Seq paper☆51Updated 3 years ago
- An R package for import, QC and analysis of Illumina Infinium genotyping arrays☆33Updated 6 years ago
- Inferring gene co-expression networks from single cell gene expression data☆24Updated 2 years ago
- ☆34Updated 8 years ago
- ☆35Updated 2 years ago
- A python tool to do comparative analysis of mulitple single cell datasets.☆21Updated 5 years ago
- ☆24Updated 5 months ago
- ChIP-seq DC and QC Pipeline☆34Updated 3 years ago
- R package providing query functionality to BioMart instances like Ensembl☆36Updated 3 months ago
- epigenome analysis to rank transcription factors☆30Updated last year
- Decomposition-based peak identification, which find peaks across a large number of TSS (transcription starting site) profiles☆14Updated 7 years ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 2 years ago
- ☆11Updated 6 years ago
- Smooth quantile normalization (qsmooth) is a generalization of quantile normalization, which is an average of the two types of assumption…☆50Updated 2 years ago