KechrisLab / SmCCNetLinks
A canonical correlation analysis based method for discovering (quantitative) trait-specific heterogeneous regulatory networks.
☆29Updated last year
Alternatives and similar repositories for SmCCNet
Users that are interested in SmCCNet are comparing it to the libraries listed below
Sorting:
- Human transcription factor target genes from 6 databases in convenient R format.☆86Updated 6 years ago
- Integrative pathway enrichment analysis of multivariate omics data☆114Updated 2 months ago
- Tumour stratification by maximum-likelihood repeated evolution from multi-region sequencing data☆65Updated 2 years ago
- Unsupervised correction of gene independent cell responses to CRISPR-cas9☆50Updated 2 years ago
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆62Updated 2 months ago
- Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens☆23Updated 6 years ago
- R package for analysing proteomics data☆49Updated 2 years ago
- Differential Count Data Analysis Toolbox☆61Updated last year
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆51Updated 7 years ago
- Annotation of genomic regions using transcription factor binding sites and epigenetic data☆41Updated 3 years ago
- Code related to the Celligner manuscript☆46Updated 4 years ago
- Explore and download data from the recount3 project☆36Updated 4 months ago
- An S3 data object and framework for common quantitative proteomic analyses☆47Updated 3 months ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆56Updated 2 years ago
- Wrapper R scripts for performing a weighted-gene co-expression network analysis (WGCNA)☆28Updated 10 years ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆57Updated last year
- Pathway-Level Information Extractor (PLIER): a generative model for gene expression data☆54Updated last year
- ISCB DC Area Regional Student Group - Summer 2016 Workshop☆48Updated 9 years ago
- Differential Gene Correlation Analysis☆45Updated last year
- Shiny GUI application for genomics meta-analysis☆22Updated 4 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆43Updated 5 years ago
- Software Package for Transcription Factor Binding Site (TFBS) Analysis☆30Updated 6 months ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 4 years ago
- R package containing useful functions for mutational signature analysis☆84Updated this week
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆50Updated 6 years ago
- Immunology-related bioinformatics data and tools☆73Updated last year
- Reference transcriptome indices build from kallisto for popular organisms☆43Updated last year
- Soon to be deprecated in favor of broadinstitute/warp github repo. Previously: Secondary analysis pipelines☆48Updated 6 months ago
- ☆62Updated 5 years ago
- Integrative analysis pipeline for pooled CRISPR functional genetic screens☆30Updated last year