A canonical correlation analysis based method for discovering (quantitative) trait-specific heterogeneous regulatory networks.
☆32May 8, 2026Updated 3 months ago
Alternatives and similar repositories for SmCCNet
Users that are interested in SmCCNet are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tool comparison for detecting differentially expressed individual transposable elements☆12Jan 7, 2022Updated 4 years ago
- ☆17Jul 8, 2024Updated 2 years ago
- analyze_geo_microarrays.py : Differential expression analysis of published microarrays datasets from the NCBI Gene Expression Omnibus (GE…☆12Aug 1, 2021Updated 5 years ago
- VirusScan Pipeline☆12Feb 7, 2026Updated 6 months ago
- Ultrafast method to compute single-sample gene set enrichment scores for gene expression or proteomics data☆24Aug 13, 2026Updated 3 weeks ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- A pipeline for comprehensive genomic analyses of Mycobacterium tuberculosis with a focus on clinical decision making as well as research☆19Aug 10, 2026Updated 3 weeks ago
- A framework for analyzing biological data via graph construction, clustering, and embedding generation. The resulting embeddings power do…☆21Jul 6, 2026Updated last month
- VPOT - Variant Prioritisation Ordering Tool. VPOT is a Python tool written to allow prioritisation of variants in ANNOVAR annotated VCF f…☆19Oct 27, 2021Updated 4 years ago
- A web-browser app to visualise, interpret and prioritise genomic/transcriptomic structural variations (SVs) of multiple samples.☆14May 16, 2026Updated 3 months ago
- cyREST examples for Python users.☆11Feb 20, 2018Updated 8 years ago
- ☆12Dec 14, 2021Updated 4 years ago
- The seqtime R package provides functions to analyse sequencing data time series and to simulate community dynamics☆20Dec 9, 2022Updated 3 years ago
- Vanilla regression methods for microbiome differential abundance analysis☆62Nov 3, 2020Updated 5 years ago
- Multi-Omics Peptide Generator☆30Nov 6, 2025Updated 9 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- a series of R programs to accompany the book Cause and correlation in biology☆19Dec 1, 2023Updated 2 years ago
- 1208 Dandisets, 1.0 PB total. DataLad super-dataset of all Dandisets from https://github.com/dandisets☆15Updated this week
- Code for the paper "MetaQ: fast, scalable and accurate metacell inference via deep single-cell quantization"☆29Jul 27, 2026Updated last month
- Telomerecat: The telomere computational analysis tool☆14Oct 9, 2020Updated 5 years ago
- Recommendations to contenarized your bioinformatics software☆12May 30, 2018Updated 8 years ago
- SUmmarizing Multiple Enrichment analysis Results☆10Nov 14, 2024Updated last year
- Deduplication for cfDNA sequencing data☆11Jul 5, 2017Updated 9 years ago
- insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…☆32Mar 1, 2017Updated 9 years ago
- Wrapper to access InChI from Java☆10Jul 26, 2026Updated last month
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Data, results, and code accompanying the manuscript: "Supervised learning is an accurate method for network-based gene classification"☆10Nov 3, 2021Updated 4 years ago
- Enabling differential allele-specific analysis☆12Dec 28, 2024Updated last year
- Python package for cancer early detection based on a model of cancer evolution and circulating tumor DNA (ctDNA) shedding☆13Jan 8, 2021Updated 5 years ago
- Repository of the integrated mouse gut metagenomic catalog☆20Mar 14, 2022Updated 4 years ago
- REEV: Explanation and Evaluation of Variants☆11Apr 27, 2026Updated 4 months ago
- Visualizing genetic sequence variation☆14Apr 27, 2020Updated 6 years ago
- Repository holding the code for the drugfindR R package☆13Updated this week
- Pipeline for RNA and DNA integrated analysis for somatic mutation detection☆13Updated this week
- Search your Paperpile library with Alfred☆10Aug 18, 2026Updated 2 weeks ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Phenotype-based Diagnosis Tool for Rare Diseases☆13Mar 2, 2026Updated 6 months ago
- ☆14Aug 31, 2016Updated 10 years ago
- Regulatory Element Locus Intersection (RELI) Analysis☆14Jun 12, 2026Updated 2 months ago
- Config and setup to run nf-core/raredisease pipeline☆10Sep 11, 2025Updated 11 months ago
- Generating tool descriptors from bio.tools☆10Jun 13, 2018Updated 8 years ago
- python scripts for proteogenomics analysis☆10Oct 17, 2019Updated 6 years ago
- ☆13Dec 29, 2021Updated 4 years ago