A canonical correlation analysis based method for discovering (quantitative) trait-specific heterogeneous regulatory networks.
☆32May 8, 2026Updated 2 months ago
Alternatives and similar repositories for SmCCNet
Users that are interested in SmCCNet are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Regulatory networks with Direct Information☆19Oct 14, 2019Updated 6 years ago
- Tool comparison for detecting differentially expressed individual transposable elements☆12Jan 7, 2022Updated 4 years ago
- Tools for building and manipulating graphs in Python☆46Dec 18, 2025Updated 7 months ago
- analyze_geo_microarrays.py : Differential expression analysis of published microarrays datasets from the NCBI Gene Expression Omnibus (GE…☆11Aug 1, 2021Updated 4 years ago
- ☆38Dec 3, 2017Updated 8 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- VirusScan Pipeline☆12Feb 7, 2026Updated 5 months ago
- Ultrafast method to compute single-sample gene set enrichment scores for gene expression or proteomics data☆24May 2, 2026Updated 2 months ago
- A framework for analyzing biological data via graph construction, clustering, and embedding generation. The resulting embeddings power do…☆22Jul 6, 2026Updated 2 weeks ago
- VPOT - Variant Prioritisation Ordering Tool. VPOT is a Python tool written to allow prioritisation of variants in ANNOVAR annotated VCF f…☆19Oct 27, 2021Updated 4 years ago
- A web-browser app to visualise, interpret and prioritise genomic/transcriptomic structural variations (SVs) of multiple samples.☆14May 16, 2026Updated 2 months ago
- ☆15Jun 4, 2014Updated 12 years ago
- ☆12Dec 14, 2021Updated 4 years ago
- The seqtime R package provides functions to analyse sequencing data time series and to simulate community dynamics☆20Dec 9, 2022Updated 3 years ago
- Vanilla regression methods for microbiome differential abundance analysis☆62Nov 3, 2020Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A CNN model to identify MEIs in WGS☆14Mar 4, 2025Updated last year
- ☆22Sep 19, 2025Updated 10 months ago
- Multi-Omics Peptide Generator☆30Nov 6, 2025Updated 8 months ago
- a series of R programs to accompany the book Cause and correlation in biology☆19Dec 1, 2023Updated 2 years ago
- ☆30Apr 11, 2023Updated 3 years ago
- Code for the paper "MetaQ: fast, scalable and accurate metacell inference via deep single-cell quantization"☆29Updated this week
- Telomerecat: The telomere computational analysis tool☆14Oct 9, 2020Updated 5 years ago
- Recommendations to contenarized your bioinformatics software☆12May 30, 2018Updated 8 years ago
- SUmmarizing Multiple Enrichment analysis Results☆10Nov 14, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Deduplication for cfDNA sequencing data☆11Jul 5, 2017Updated 9 years ago
- insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…☆32Mar 1, 2017Updated 9 years ago
- Data, results, and code accompanying the manuscript: "Supervised learning is an accurate method for network-based gene classification"☆10Nov 3, 2021Updated 4 years ago
- Enabling differential allele-specific analysis☆11Dec 28, 2024Updated last year
- Python package for cancer early detection based on a model of cancer evolution and circulating tumor DNA (ctDNA) shedding☆13Jan 8, 2021Updated 5 years ago
- Repository of the integrated mouse gut metagenomic catalog☆20Mar 14, 2022Updated 4 years ago
- REEV: Explanation and Evaluation of Variants☆11Apr 27, 2026Updated 2 months ago
- ☆12Mar 1, 2025Updated last year
- A nextflow pipeline which integrates multiple omic data streams and performs coordinated analysis☆11May 9, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆10Sep 14, 2023Updated 2 years ago
- Visualizing genetic sequence variation☆14Apr 27, 2020Updated 6 years ago
- Repository holding the code for the drugfindR R package☆12Updated this week
- Pipeline for RNA and DNA integrated analysis for somatic mutation detection☆13Jul 1, 2026Updated 3 weeks ago
- Search your Paperpile library with Alfred☆10Feb 12, 2026Updated 5 months ago
- Phenotype-based Diagnosis Tool for Rare Diseases☆13Mar 2, 2026Updated 4 months ago
- ☆14Aug 31, 2016Updated 9 years ago