GenomiqueENS / eoulsanLinks
A pipeline and a framework for NGS analysis (RNA-seq and scRNA-seq)
☆54Updated 5 months ago
Alternatives and similar repositories for eoulsan
Users that are interested in eoulsan are comparing it to the libraries listed below
Sorting:
- A toolkit for QC and visualization of ATAC-seq results.☆72Updated 11 months ago
- Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).☆93Updated 8 years ago
- ATAC-seq snakemake pipeline☆88Updated 5 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆60Updated 5 years ago
- An R package for inferring the subclonal architecture of tumors☆122Updated 2 years ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated 2 years ago
- HMMRATAC peak caller for ATAC-seq data☆99Updated last year
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 6 years ago
- STAR based ENCODE Long RNA-Seq processing pipeline☆96Updated 4 years ago
- nucleosome calling using ATAC-seq☆109Updated 4 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆98Updated 4 years ago
- RNA-Seq analysis workflow☆105Updated 4 years ago
- A tool for bigWig files.☆118Updated 7 years ago
- Tutorial for AMSI BioInfoSummer 2018☆30Updated 7 years ago
- deconstructSigs☆144Updated 2 years ago
- Tools for processing UMI RNA-tag data☆131Updated 2 years ago
- DNA methylation analysis notes from Ming Tang☆92Updated 6 years ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆104Updated 3 years ago
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆63Updated 4 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆83Updated 10 months ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 4 years ago
- ☆72Updated 2 years ago
- Inferring and visualizing clonal evolution in multi-sample cancer sequencing☆148Updated 5 years ago
- csf fork of fastqc for usage on selected reads of unaligned bam file☆48Updated 12 years ago
- a snakemake pipeline to process ChIP-seq files from GEO or in-house☆110Updated 5 years ago
- A factor analysis package☆103Updated 13 years ago
- Create timecourse "fish plots" that show changes in the clonal architecture of tumors☆172Updated 2 years ago
- ☆32Updated 7 years ago
- ☆56Updated last month
- Unsorted scripts for bioinformatics☆61Updated 4 years ago