A pipeline and a framework for NGS analysis (RNA-seq and scRNA-seq)
☆55Mar 1, 2026Updated 2 weeks ago
Alternatives and similar repositories for eoulsan
Users that are interested in eoulsan are comparing it to the libraries listed below
Sorting:
- An automated post sequencing data processing pipeline for Illumina HiSeq☆14Aug 28, 2025Updated 6 months ago
- ☆20Mar 16, 2019Updated 7 years ago
- Scripts to run and benchmark scRNA-seq cell cluster labeling methods☆48May 23, 2020Updated 5 years ago
- ☆14Nov 3, 2017Updated 8 years ago
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆16Jun 28, 2025Updated 8 months ago
- ☆20Oct 29, 2025Updated 4 months ago
- This is the repository which contains the code that was used to generate the results and figures of the “Single-cell RNA-sequencing revea…☆13Jun 21, 2024Updated last year
- ☆16Jan 3, 2021Updated 5 years ago
- ☆14Feb 24, 2020Updated 6 years ago
- Rphenograph: R implementation of the PhenoGraph algorithm☆52Jun 8, 2020Updated 5 years ago
- ☆15Dec 9, 2019Updated 6 years ago
- Assessing the reproducibility of proccessed ChIP-seq peaks☆13Mar 7, 2021Updated 5 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆30Jan 6, 2021Updated 5 years ago
- optimization of ribosome P-site positioning in ribosome profiling data☆59Feb 24, 2025Updated last year
- Predicting oncogenic potential of gene fusions☆13Feb 13, 2016Updated 10 years ago
- Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments☆10Mar 13, 2021Updated 5 years ago
- ChIP-seq analysis notes from Tommy Tang☆19Jun 28, 2016Updated 9 years ago
- Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression☆16Jun 28, 2024Updated last year
- A post sequencing QC tool for Oxford Nanopore sequencers☆109Mar 11, 2026Updated last week
- 10X single cell Nanopore reads simulation workflow. Complete documentation avialable at: https://GenomiqueENS.github.io/AsaruSim/☆13Jul 27, 2025Updated 7 months ago
- Biomark Fluidigm qPCR data set: processing and analysis☆11Apr 8, 2024Updated last year
- Statistical Analysis of RNA-Seq Tools☆108Oct 9, 2025Updated 5 months ago
- Rmarkdown / compiled html files for human reprogramming dataset analysis☆18Jun 11, 2020Updated 5 years ago
- Tools for processing UMI RNA-tag data☆131Mar 15, 2023Updated 3 years ago
- STAMPS 2018 course☆15Aug 8, 2018Updated 7 years ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆22Jun 28, 2024Updated last year
- scDataviz: single cell dataviz and downstream analyses☆66Sep 24, 2021Updated 4 years ago
- Quantifiable predictive features define epitope-specific T cell receptor repertoires☆13Dec 8, 2022Updated 3 years ago
- Code used to carry out parameter estimation, correlation estimation, type 1 error analysis, and power analysis for our "Pseudoreplication…☆21Sep 9, 2020Updated 5 years ago
- This repository contains code to generate standardized cell type nomenclature from an R "dendrogram".☆13Apr 25, 2022Updated 3 years ago
- Soon to be deprecated in favor of broadinstitute/warp github repo. Previously: Secondary analysis pipelines☆47Mar 13, 2025Updated last year
- Deduplication for cfDNA sequencing data☆11Jul 5, 2017Updated 8 years ago
- Probabilistic gene expression barcodes for cell type annotation☆26Apr 26, 2022Updated 3 years ago
- Generate HTML report for a set of genomic regions or DESeq2/edgeR results☆10Jan 14, 2025Updated last year
- R code in workflow of chip-seq analysis☆11Nov 20, 2019Updated 6 years ago
- Pipeline for Illumina shotgun sequencing of 16S rRNA amplicon sequences☆14Sep 2, 2016Updated 9 years ago
- Cell type matching in single-cell RNA-sequencing data using FR-Match☆19Feb 16, 2026Updated last month
- Data from Lewis, Barnes, Blighe et al., Cell Rep. 2019 Aug 27; 28(9): 2455–2470.e5.☆122May 28, 2020Updated 5 years ago
- This repository contains a list of tools or methods that have been used in GIAB analysis☆29Nov 15, 2019Updated 6 years ago