GenomiqueENS / eoulsanLinks
A pipeline and a framework for NGS analysis (RNA-seq and scRNA-seq)
☆52Updated 3 months ago
Alternatives and similar repositories for eoulsan
Users that are interested in eoulsan are comparing it to the libraries listed below
Sorting:
- nucleosome calling using ATAC-seq☆106Updated 4 years ago
- ☆69Updated last year
- Pipeline for processing inDrops sequencing data☆76Updated 6 years ago
- HMMRATAC peak caller for ATAC-seq data☆100Updated 7 months ago
- A toolkit for QC and visualization of ATAC-seq results.☆70Updated 5 months ago
- ATAC-seq snakemake pipeline☆89Updated 5 years ago
- Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).☆93Updated 7 years ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆114Updated 4 months ago
- Integrative pathway enrichment analysis of multivariate omics data☆111Updated 2 weeks ago
- ☆117Updated last year
- R package containing useful functions for mutational signature analysis☆82Updated this week
- Quality of RNA-Seq Toolset☆53Updated 6 years ago
- deconstructSigs☆141Updated 2 years ago
- a snakemake pipeline to process ChIP-seq files from GEO or in-house☆108Updated 5 years ago
- A tool for bigWig files.☆119Updated 7 years ago
- Reference transcriptome indices build from kallisto for popular organisms☆42Updated last year
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Updated 7 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆59Updated 4 years ago
- An R package for inferring the subclonal architecture of tumors☆121Updated last year
- Tutorial for AMSI BioInfoSummer 2018☆29Updated 6 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆97Updated 4 years ago
- Detecting intron retention from RNA-Seq experiments☆55Updated 11 months ago
- Tutorials on accessing public reference and genomic data☆30Updated 4 months ago
- STAR based ENCODE Long RNA-Seq processing pipeline☆94Updated 4 years ago
- WASP: allele-specific pipeline for unbiased read mapping and molecular QTL discovery☆105Updated 4 years ago
- Publication quality NGS track plotting☆113Updated 3 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆81Updated 5 months ago
- fork of RSeQC python RNAseq metrics suit of tools☆48Updated 6 years ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated last year
- ☆30Updated 6 years ago