Similar genome assisted reassembly pipeline for PacBio long reads
☆99Dec 7, 2021Updated 4 years ago
Alternatives and similar repositories for AlignGraph2
Users that are interested in AlignGraph2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- High Throughput Algorithm for Long Read Error Correction☆128Jun 11, 2018Updated 8 years ago
- Algorithm for secondary de novo genome assembly guided by closely related references☆167Feb 4, 2020Updated 6 years ago
- Reference Assisted Misassembly Detection Algorithm Using Short and Long Reads☆121Feb 11, 2018Updated 8 years ago
- 🌭💦 91porn爬虫在线无限制API接口(永久有效,口令每日更新) 及 在线web预览☆344Feb 21, 2021Updated 5 years ago
- Fast and High Throughput Algorithm for PacBio Long Read Self-Correction☆119Feb 12, 2019Updated 7 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- nimble aligner that will map your reads to the references on a laptop☆11Jun 29, 2017Updated 9 years ago
- Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.☆15Dec 16, 2019Updated 6 years ago
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- ☆20Aug 18, 2020Updated 5 years ago
- ☆24Apr 2, 2021Updated 5 years ago
- Implementation for sGLMM (Sparse graph-structured linear mixed model)☆15Feb 13, 2023Updated 3 years ago
- URMAP ultra-fast read mapper☆38Jun 15, 2020Updated 6 years ago
- ☆11Dec 9, 2022Updated 3 years ago
- Pan-genome Seed Index☆20Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Economic Genome Assembly from Low Coverage Illumina and Nanopore Data☆19Feb 15, 2022Updated 4 years ago
- GBWT-based handle graph☆35Jun 17, 2026Updated 2 weeks ago
- ☆12Aug 23, 2023Updated 2 years ago
- Non-parametric structural variant genotyper☆15Nov 18, 2021Updated 4 years ago
- Align subreads to ccs reads☆14Jun 11, 2025Updated last year
- GERMLINE is an algorithm for inferring long shared segments of Identity by Descent (IBD) between pairs of individuals in a large populati…☆16Apr 5, 2019Updated 7 years ago
- ☆13Jan 23, 2020Updated 6 years ago
- Header-only, gzread-like reader for gzip, bz2, and xz.☆11Aug 8, 2018Updated 7 years ago
- SARS-CoV-2 Deep Sequencing☆14Apr 22, 2020Updated 6 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Implementation of eBWT using Prefix-free parse (PFP)☆14Jul 14, 2025Updated 11 months ago
- Hey, I bring my coffee with me. Here's what I use.☆15Mar 21, 2018Updated 8 years ago
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Nov 27, 2019Updated 6 years ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Feb 2, 2021Updated 5 years ago
- A software for discovery, genotyping and characterization of structural variants☆22Sep 11, 2024Updated last year
- Long Approximate Matches-based Split Aligner☆13Apr 6, 2017Updated 9 years ago
- Python-like decorator in Rust☆15May 14, 2020Updated 6 years ago
- Johns Hopkins University student-led genomics paper discussion group☆13Apr 19, 2020Updated 6 years ago
- TGS scaffolding☆47Nov 19, 2021Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- misFinder: Identify mis-assemblies in an unbiased manner using reference and paired-end reads☆10Oct 17, 2015Updated 10 years ago
- Chromosome Scale Assembler: A high-throughput chromosome scale genome assembly pipeline for vertebrate genomes☆10Oct 16, 2024Updated last year
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Apr 29, 2024Updated 2 years ago
- Refinements of the WFA alignment algorithm with better complexity☆26Mar 31, 2022Updated 4 years ago
- Portable Crystal binary distributions for Linux on x86_64☆15Mar 22, 2021Updated 5 years ago
- NanopolishComp is a Python3 package for downstream analyses of Nanopolish output files☆10Dec 22, 2020Updated 5 years ago
- Graph-based mapping of long sequences, noisy or HiFi.☆55Oct 5, 2020Updated 5 years ago