rezacsedu / XAI-for-bioinformatics

Related projects ⓘ

Alternatives and complementary repositories for XAI-for-bioinformatics

• JoshuaChou2018 / AutoBA
  An AI Agent for Fully Automated Multi-omic Analyses
  ☆121Updated 2 weeks ago
• biocore / tcga
  Microbial analysis in TCGA data
  ☆89Updated 8 months ago
• immunitastx / coding_exercise_TCGA_infiltration
  coding exercise using TCGA immune infiltration data
  ☆43Updated 9 months ago
• urmi-21 / pyrpipe
  Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.
  ☆81Updated 3 years ago
• calico / borzoi
  RNA-seq prediction with deep convolutional neural networks.
  ☆89Updated 3 weeks ago
• broadinstitute / depmap_omics
  What you need to process the Quarterly DepMap-Omics releases from Terra
  ☆110Updated this week
• urmi-21 / COVID-19-RNA-Seq-datasets
  A repository for sharing information on available COVID-19 RNA-Seq datasets
  ☆78Updated 2 years ago
• FunctionLab / sei-framework
  code to run sei and obtain sei and sequence class predictions
  ☆92Updated last year
• kundajelab / bpnet
  Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them
  ☆142Updated 3 months ago
• slowkow / awesome-vdj
  📚 Tools and databases for analyzing HLA and VDJ genes.
  ☆210Updated 6 months ago
• vagarwal87 / Xpresso
  Predicting gene expression levels from genomic sequences
  ☆50Updated 4 years ago
• sjgosai / boda2
  Computational Optimization of DNA Activity (CODA)
  ☆39Updated 2 months ago
• xinyu-dev / igblast
  Detailed explanation on how to setup database for NCBI IgBlast executable, and using it in Python
  ☆28Updated 2 years ago
• urmi-21 / orfipy
  Fast and flexible ORF finder
  ☆62Updated 2 years ago
• saezlab / dorothea
  R package to access DoRothEA's regulons
  ☆133Updated 8 months ago
• Genentech / gReLU
  gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.
  ☆226Updated this week
• Illumina / PrimateAI-3D
  ☆61Updated 4 months ago
• saezlab / decoupler-py
  Python package to perform enrichment analysis from omics data.
  ☆166Updated 2 months ago
• saezlab / pypath
  Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotat…
  ☆134Updated this week
• epigen / KPNN
  Knowledge-primed neural networks
  ☆34Updated last year
• sidhomj / DeepTCR
  Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data
  ☆113Updated last year
• crazyhottommy / machine-learning-resource
  ☆72Updated last month
• j-andrews7 / awesome-bioinformatics-benchmarks
  A curated list of bioinformatics bench-marking papers and resources.
  ☆315Updated 3 months ago
• evanpeikon / math_for_compbio
  This repository contains math tutorials I created for Bioinformatics and Computational Biology.
  ☆74Updated 2 months ago
• CebolaLab / RNA-seq
  Step-by-step analysis pipeline for RNA-seq data
  ☆77Updated last year
• ntranoslab / esm-variants
  ☆66Updated last year
• HussainAther / awesome-alternative-splicing
  Alternative splicing resource
  ☆51Updated 6 years ago
• ML4GLand / EUGENe
  Elucidating the Utility of Genomic Elements with Neural Nets
  ☆65Updated this week
• crazyhottommy / TCR-BCR-seq-analysis
  T/B cell receptor sequencing analysis notes
  ☆212Updated 3 months ago
• KrishnaswamyLab / SingleCellWorkshop
  ☆88Updated 3 years ago