Alternatives and similar repositories for XAI-for-bioinformatics:

Users that are interested in XAI-for-bioinformatics are comparing it to the libraries listed below

• immunitastx / coding_exercise_TCGA_infiltration
  coding exercise using TCGA immune infiltration data
  ☆44Updated 11 months ago
• calico / borzoi
  RNA-seq prediction with deep convolutional neural networks.
  ☆116Updated last month
• JoshuaChou2018 / AutoBA
  An AI Agent for Fully Automated Multi-omic Analyses
  ☆147Updated 2 months ago
• biocore / tcga
  Microbial analysis in TCGA data
  ☆90Updated 11 months ago
• slowkow / awesome-vdj
  📚 Tools and databases for analyzing HLA and VDJ genes.
  ☆217Updated last month
• saezlab / pypath
  Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotat…
  ☆137Updated 2 months ago
• mhtjsh / Bioinformatics_Algorithms
  I am sharing my code repository to understand the working and principle of working of various BioInformatics code in Python
  ☆24Updated last month
• broadinstitute / depmap_omics
  What you need to process the Quarterly DepMap-Omics releases from Terra
  ☆114Updated this week
• crazyhottommy / machine-learning-resource
  ☆74Updated last month
• Genentech / gReLU
  gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.
  ☆241Updated last week
• epigen / KPNN
  Knowledge-primed neural networks
  ☆35Updated last year
• kundajelab / bpnet
  Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them
  ☆148Updated 5 months ago
• FunctionLab / sei-framework
  code to run sei and obtain sei and sequence class predictions
  ☆96Updated 2 years ago
• urmi-21 / pyrpipe
  Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.
  ☆82Updated 3 years ago
• saezlab / dorothea
  R package to access DoRothEA's regulons
  ☆142Updated 11 months ago
• omgenomics / bio-data-zoo
  Example genomics data for tool developers
  ☆108Updated 6 months ago
• sidhomj / DeepTCR
  Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data
  ☆115Updated last year
• ntranoslab / esm-variants
  ☆70Updated last year
• j-andrews7 / awesome-bioinformatics-benchmarks
  A curated and summarized list of bioinformatics bench-marking papers and resources.
  ☆326Updated last month
• evanpeikon / math_for_compbio
  This repository contains math tutorials I created for Bioinformatics and Computational Biology.
  ☆83Updated 5 months ago
• urmi-21 / COVID-19-RNA-Seq-datasets
  A repository for sharing information on available COVID-19 RNA-Seq datasets
  ☆79Updated 2 years ago
• crazyhottommy / TCR-BCR-seq-analysis
  T/B cell receptor sequencing analysis notes
  ☆216Updated last month
• tanjimin / C.Origami
  C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.
  ☆68Updated 6 months ago
• Illumina / PrimateAI-3D
  ☆64Updated 6 months ago
• HussainAther / awesome-alternative-splicing
  Alternative splicing resource
  ☆51Updated 6 years ago
• evanpeikon / functional_enrichment_analysis
  A DIY guide to gene ontology, pathway, and gene set enrichment analysis
  ☆20Updated 5 months ago
• sjgosai / boda2
  Computational Optimization of DNA Activity (CODA)
  ☆53Updated 2 weeks ago
• mdozmorov / Cancer_notes
  A continually expanding collection of cancer genomics notes and data
  ☆102Updated 3 months ago
• ML4GLand / EUGENe
  Elucidating the Utility of Genomic Elements with Neural Nets
  ☆65Updated last month