Explainable AI for Bioinformatics
☆127Apr 3, 2023Updated 2 years ago
Alternatives and similar repositories for XAI-for-bioinformatics
Users that are interested in XAI-for-bioinformatics are comparing it to the libraries listed below
Sorting:
- a collection of colabs useful for molecular biology☆32Feb 27, 2024Updated 2 years ago
- AWS for Bioinformatics Researchers☆188Jul 17, 2025Updated 7 months ago
- R tool to analyse and integrate multiple -omics data☆15Jan 4, 2026Updated 2 months ago
- A deep-learning-based multiple toolkits (DeTool) approach that uses the inputs of enzymes and substrates for biocatalystic tasks.☆10Nov 24, 2023Updated 2 years ago
- Graphical Representation of Ancestral Sequence Predictions☆12Mar 6, 2023Updated 3 years ago
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆43Jul 3, 2025Updated 8 months ago
- A pipeline creation tool using Snakemake☆12Updated this week
- In-silico Saturation Mutagenesis implementation with 10x or more speedup for certain architectures.☆22Jun 18, 2022Updated 3 years ago
- Tool for plotting sequencing data along genomic coordinates.☆336Dec 12, 2025Updated 2 months ago
- Shiny app to easily create publishable plots for scientific papers☆39Aug 9, 2025Updated 6 months ago
- Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks☆33Jun 9, 2024Updated last year
- AlphaRING is a package designed for interpretable, protein structure-based prediction of missense variant deleteriousness.☆22Aug 6, 2025Updated 7 months ago
- Introduction to Computational Biology and Bioinformatics Course at Caltech, 2023☆520Jan 14, 2026Updated last month
- Code for paper "Principled feature attribution for unsupervised gene expression analysis"☆12Mar 7, 2023Updated 3 years ago
- ☆25Aug 20, 2024Updated last year
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆122Feb 24, 2026Updated last week
- Tutorial for "Advances in machine learning for molecules" (for Summer School for Machine Learning in Bioinformatics, https://cs.hse.ru/ss…☆20Aug 26, 2020Updated 5 years ago
- De novo chromosome-level scaffolding and phasing tool using Hi-C☆30Nov 23, 2025Updated 3 months ago
- ☆26Aug 10, 2023Updated 2 years ago
- Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …☆40Mar 27, 2025Updated 11 months ago
- ☆30May 15, 2025Updated 9 months ago
- PhyloAln: a convenient reference-based tool to align sequences and high-throughput reads for phylogeny and evolution in the omic era☆18Feb 28, 2026Updated last week
- Flexible linear mixed model framework for Genome Wide Association Studies☆18Nov 6, 2025Updated 4 months ago
- Elucidating the Utility of Genomic Elements with Neural Nets☆69Dec 2, 2024Updated last year
- ExplaiNN: interpretable and transparent neural networks for genomics☆49Apr 1, 2025Updated 11 months ago
- scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution.☆55Nov 1, 2025Updated 4 months ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Feb 12, 2022Updated 4 years ago
- Command line scientific data management tool☆231Nov 4, 2024Updated last year
- BiocSwirl is a series of in-depth swirlify generated courses used to teach bioinformatics workflows in R/Bioconductor using an interactiv…☆30Apr 4, 2021Updated 4 years ago
- A lightweight reimplementation of some of the algorithms in the MEME suite in Python.☆28Feb 22, 2026Updated 2 weeks ago
- Efficient retrieval, download, and unification of genomic data from leading biodiversity databases☆18Updated this week
- Intuitive guide to multi-omics integration with toy examples: supervised latent components (DIABLO), unsupervised shared/partial/unique s…☆75Dec 28, 2025Updated 2 months ago
- Machine learning methods for DNA sequence analysis.☆60Feb 27, 2026Updated last week
- Python library for array programming on biological datasets. Documentation available at: https://bionumpy.github.io/bionumpy/☆290Jun 16, 2025Updated 8 months ago
- Repository for the paper "The impact of package selection and versioning on single-cell RNA-seq analysis"☆21Nov 27, 2025Updated 3 months ago
- KDS software for Kinase Drug Selectivity☆11Jun 8, 2023Updated 2 years ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆43Jan 7, 2026Updated 2 months ago
- Template for building your own portfolio☆27Jul 2, 2025Updated 8 months ago
- Terminal protein structure viewer — interactive 3D visualization of PDB/mmCIF structures with cartoon ribbons, braille rendering, and Six…☆43Updated this week