Diverse Genomic Embedding Benchmark
☆54Sep 4, 2025Updated 11 months ago
Alternatives and similar repositories for DGEB
Users that are interested in DGEB are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆52Aug 19, 2024Updated last year
- Run Jupyter on Orchestra 2☆12Jan 18, 2023Updated 3 years ago
- Promoter activity measurement and modeling; artificial promoter design and testing☆13Mar 24, 2023Updated 3 years ago
- Benchmark for Biophysical Sequence Optimization Algorithms☆24Apr 15, 2026Updated 4 months ago
- ☆93Feb 11, 2026Updated 6 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆24Jul 30, 2026Updated 2 weeks ago
- a pipeline to cluster proteins into families☆10Apr 1, 2020Updated 6 years ago
- Toolkit for establishing, updating, and validating GTDB species clusters☆20Jun 17, 2026Updated last month
- Python CLI for alignment-free genomics.☆13May 25, 2026Updated 2 months ago
- Code, scripts, some logs and general misc. from to the RNA viruses in MetaTranscriptome discovery project.☆12Jan 5, 2023Updated 3 years ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆26Jul 22, 2024Updated 2 years ago
- Logan Unitigs and Contigs☆198Aug 5, 2026Updated last week
- PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.☆20Dec 12, 2024Updated last year
- Prediction of microbial interactions in complex communities☆14Aug 14, 2024Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆33Aug 22, 2024Updated last year
- Python scripts for Exploratory Data Analysis of Pacific Biosciences sequence data☆18Aug 13, 2014Updated 12 years ago
- ☆13Oct 7, 2024Updated last year
- ☆135May 19, 2026Updated 2 months ago
- Embedding-based indexing for compact storage and rapid querying of bacterial pan-genomes☆23Jul 11, 2026Updated last month
- AntiRef: reference clusters of human antibody sequences☆12Apr 18, 2024Updated 2 years ago
- Fitness landscape exploration sandbox for biological sequence design.☆175Feb 16, 2023Updated 3 years ago
- Predict plasmids from uncorrected long read data☆41Feb 27, 2026Updated 5 months ago
- ☆11Jun 13, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Index kmtricks bf matrices☆49Jul 6, 2026Updated last month
- Monster Lab: teaching the science of sequencing with Lego☆16Sep 14, 2018Updated 7 years ago
- POUTINE: a next-generation homoplasy counting method for genome-wide association studies.☆10Mar 9, 2023Updated 3 years ago
- Comparing and combining multiple metagenomic datasets☆16Oct 12, 2022Updated 3 years ago
- BioSeq-BLM: a platform for analyzing DNA, RNA and protein sequences based on biological language models☆14Aug 21, 2022Updated 3 years ago
- k-mers and the like☆23Updated this week
- ☆52Mar 22, 2026Updated 4 months ago
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆25Feb 25, 2023Updated 3 years ago
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆42Feb 25, 2023Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- This is the GPT2 baseline for ProtoQA☆12Jan 3, 2022Updated 4 years ago
- Interactive tools for metagenome visualization and binning in R☆27Jun 28, 2018Updated 8 years ago
- ☆24Feb 7, 2022Updated 4 years ago
- ☆18Aug 10, 2020Updated 6 years ago
- Genomic language model predicts protein co-regulation and function☆91Mar 19, 2025Updated last year
- Homebrew tap for formulae to build ARB (http://www.arb-home.de) and related software.☆14Jul 1, 2026Updated last month
- AIRFold Protein Structure Prediction System☆12Mar 24, 2025Updated last year