TattaBio / DGEBLinks
Diverse Genomic Embedding Benchmark
☆50Updated 5 months ago
Alternatives and similar repositories for DGEB
Users that are interested in DGEB are comparing it to the libraries listed below
Sorting:
- ☆79Updated last year
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆50Updated last year
- GraphPart, a data partitioning method for ML on biological sequences☆33Updated 2 years ago
- ☆51Updated last year
- Evolutionary velocity with protein language models☆95Updated 2 months ago
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆31Updated 2 years ago
- Mutation effects predicted from sequence co-variation☆72Updated 8 years ago
- ☆86Updated 2 years ago
- DeepECtransformer☆29Updated 2 years ago
- Genomic language model predicts protein co-regulation and function☆86Updated 10 months ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆67Updated 3 years ago
- Code for LazyAF pipeline☆23Updated last year
- Comprehensive Python client for the Uniprot REST API☆55Updated 4 months ago
- Phyla: Towards a Foundation Model for Phylogenetic Inference☆28Updated 2 months ago
- ☆30Updated 2 years ago
- Detection of remote homology by comparison of protein language model representations☆61Updated last year
- Fast protein domain structure embedding+search tool☆27Updated 4 months ago
- Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN.☆42Updated last week
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆44Updated 3 weeks ago
- Fast protein structure searching or your money back☆118Updated 3 weeks ago
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆57Updated 6 years ago
- Automatic oligonucleotide design for PCR-based gene synthesis☆51Updated 2 months ago
- An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies☆39Updated 4 months ago
- Transmembrane proteins predicted through Language Model embeddings☆44Updated 6 months ago
- Fully convolutional deep learning variant effect predictor architecture☆23Updated 2 years ago
- ProtNote is a multimodal deep learning model that leverages free-form text to enable both supervised and zero-shot protein function predi…☆58Updated 9 months ago
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆80Updated last week
- Species-aware DNA language modeling☆18Updated 3 years ago
- Modeling whole bacterial genome as a sequence of proteins.☆86Updated 2 weeks ago
- Evolutionary conservation estimation of residues or nucleotides☆57Updated 3 years ago