TattaBio / DGEBLinks
Diverse Genomic Embedding Benchmark
☆50Updated 4 months ago
Alternatives and similar repositories for DGEB
Users that are interested in DGEB are comparing it to the libraries listed below
Sorting:
- ☆51Updated last year
- ☆77Updated last year
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆50Updated last year
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆31Updated 2 years ago
- Evolutionary velocity with protein language models☆95Updated last month
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆66Updated 3 years ago
- DeepECtransformer☆29Updated 2 years ago
- Genomic language model predicts protein co-regulation and function☆85Updated 9 months ago
- GraphPart, a data partitioning method for ML on biological sequences☆33Updated 2 years ago
- Comprehensive Python client for the Uniprot REST API☆54Updated 3 months ago
- ProtNote is a multimodal deep learning model that leverages free-form text to enable both supervised and zero-shot protein function predi…☆58Updated 8 months ago
- ☆85Updated 2 years ago
- Species-aware DNA language modeling☆18Updated 2 years ago
- Mutation effects predicted from sequence co-variation☆70Updated 8 years ago
- Code for LazyAF pipeline☆21Updated last year
- Fast protein domain structure embedding+search tool☆27Updated 3 months ago
- Multi-class signal peptide prediction and structure decoding model.☆102Updated 11 months ago
- ☆49Updated last year
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆77Updated last month
- Detection of remote homology by comparison of protein language model representations☆61Updated last year
- An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies☆39Updated 4 months ago
- Transmembrane proteins predicted through Language Model embeddings☆44Updated 5 months ago
- Fully convolutional deep learning variant effect predictor architecture☆23Updated 2 years ago
- A pipeline to build similarity maps of protein space☆40Updated 3 months ago
- Phyla: Towards a Foundation Model for Phylogenetic Inference☆27Updated last month
- Feature map and function annotation of Proteins☆34Updated last year
- Fast protein structure searching or your money back☆118Updated this week
- Deep networks for protein functional inference☆182Updated last week
- Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019☆19Updated 6 years ago
- Protein structure comparison tools such as SSAP and SNAP☆66Updated 2 years ago