Alternatives and similar repositories for SPOC

Users that are interested in SPOC are comparing it to the libraries listed below

• BioComputingUP / MobiDB-lite
  Long disorder consensus predictor
  ☆16Updated 4 months ago
• ThomasCMcLean / LazyAF
  Code for LazyAF pipeline
  ☆20Updated last year
• frankligy / DeepImmuno
  Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity
  ☆70Updated 2 years ago
• FunctionLab / tapioca
  a framework for predicting global protein-protein interaction networks from dynamic mass spec data
  ☆24Updated last year
• X-lab-3D / PANDORA
  MODELLER-based, anchor restrained, Peptide-MHC Modelling pipeline
  ☆22Updated last month
• KULL-Centre / _2022_functional-sites-cagiada
  ☆22Updated 2 years ago
• Rostlab / ConSurf
  Evolutionary conservation estimation of residues or nucleotides
  ☆46Updated 3 years ago
• GreiffLab / manuscript_ab_epitope_interaction
  ☆25Updated last year
• esbgkannan / kibby
  A fast, alignment-free method for estimating sequence conservation using protein sequence embedding
  ☆17Updated 2 years ago
• psipred / merizo_search
  Fast protein domain structure embedding+search tool
  ☆23Updated 2 months ago
• graph-part / graph-part
  GraphPart, a data partitioning method for ML on biological sequences
  ☆28Updated last year
• PDB-REDO / AlphaBridge
  ☆36Updated 2 weeks ago
• ohuelab / SpatialPPI
  ☆11Updated last year
• jurgjn / af-protein-universe
  Code, intermediate results and an interactive visualisation on prediction of putative novel enzymes and small molecule binding proteins p…
  ☆26Updated last year
• Bitbol-Lab / Phylogeny-MSA-Transformer
  Supporting repository for "Protein language models trained on multiple sequence alignments learn phylogenetic relationships" (https://www…
  ☆17Updated 6 months ago
• GfellerLab / MixMHCpred
  HLA-I ligand predictor
  ☆41Updated 7 months ago
• kWeissenow / MutAmore
  Rendering protein mutation movies from predicted 3D structures
  ☆20Updated last year
• Llannelongue / B4PPI
  Benchmarking Pipeline for Prediction of Protein-Protein Interactions
  ☆13Updated 3 years ago
• TurtleTools / caretta
  A software-suite to perform multiple protein structure alignment and structure feature extraction.
  ☆30Updated last year
• samsledje / philharmonic
  Decoding the functional networks of non-model organisms
  ☆11Updated this week
• lehner-lab / DMS2structure
  Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019
  ☆17Updated 6 years ago
• kaistsystemsbiology / DeepProZyme
  DeepECtransformer
  ☆26Updated last year
• biomed-AI / GPSite
  Geometry-aware protein binding site predictor
  ☆20Updated 10 months ago
• songlab-cal / CPT
  Cross-protein transfer learning for variant effect prediction
  ☆20Updated last year
• idptools / sparrow
  Next generation sequence parameter library for proteins
  ☆33Updated last week
• FPPGroup / CodonBERT
  CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.
  ☆39Updated 10 months ago
• allydunham / sequence_unet
  Fully convolutional deep learning variant effect predictor architecture
  ☆23Updated last year
• steineggerlab / colabfold-protocol
  ColabFold protocol
  ☆52Updated 9 months ago
• brineylab / abstar
  VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.
  ☆42Updated this week
• TviNet / DeepLoc-2.0
  Multi-label subcellular localization and sorting signal prediction based on protein foundation models
  ☆17Updated last year