*DEPRECATED* Job management for the Ensembl Genebuild pipeline
☆62Feb 29, 2024Updated 2 years ago
Alternatives and similar repositories for ensembl-pipeline
Users that are interested in ensembl-pipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Modules to interface with tools used in Ensembl Gene Annotation Process and scripts to run pipelines☆18Jun 1, 2026Updated last week
- File parsing and writing code for Ensembl☆10Apr 9, 2026Updated 2 months ago
- The code to run an Ensembl website☆22Jun 1, 2026Updated last week
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆19Oct 18, 2019Updated 6 years ago
- ☆11Aug 6, 2019Updated 6 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Trinity RNA-Seq de novo transcriptome assembly☆895Apr 23, 2026Updated last month
- ☆21Sep 14, 2022Updated 3 years ago
- Experiments for "Scaling read aligners to hundreds of threads on general-purpose processors"☆11Jun 8, 2018Updated 8 years ago
- A unified and modular interface to homology modelling software☆12Sep 27, 2023Updated 2 years ago
- Variant Call Format parser library for Go☆25Aug 11, 2017Updated 8 years ago
- Gordon's Text utils Library☆10Apr 11, 2022Updated 4 years ago
- MIRROR OF: The European Molecular Biology Open Software Suite (from git://anonscm.debian.org/debian-med/emboss.git)☆32Feb 18, 2022Updated 4 years ago
- Amino-Acid Sequence Annotation Predictor (ASAP)☆25May 13, 2020Updated 6 years ago
- The Ensembl Core Perl API and SQL schema☆83Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A Shiny tool to define the cell-type of action by integrating single cell expression data with GWAS☆12Nov 1, 2018Updated 7 years ago
- GEMTools main repository☆17Jun 21, 2022Updated 3 years ago
- ☆22May 26, 2020Updated 6 years ago
- gTaxon - a fast cross-platform NCBI taxonomy data querying (gi2taxid, taxid2taxon, name2taxid, LCA) tool, with cmd client and REST API se…☆14Jul 24, 2016Updated 9 years ago
- ☆11Oct 8, 2018Updated 7 years ago
- ☆10Oct 17, 2019Updated 6 years ago
- various sources and scripts for genomic research software☆10May 11, 2015Updated 11 years ago
- 是基础也是综合(一系列对象及函数,需要细致的讲解)☆30Apr 9, 2016Updated 10 years ago
- Pipeline for RNA and DNA integrated analysis for somatic mutation detection☆13May 20, 2026Updated 2 weeks ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data☆21Apr 22, 2024Updated 2 years ago
- Differential analysis for ChIP-seq with biological replicates☆35Jan 5, 2022Updated 4 years ago
- ☆21Dec 23, 2024Updated last year
- circular RNA analysis toolset☆89Sep 8, 2024Updated last year
- Codes for the lettuce resequencing project in 2020☆31Jun 28, 2021Updated 4 years ago
- ☆89Nov 11, 2020Updated 5 years ago
- The Ensembl Variation Perl API and SQL schema☆30Updated this week
- Tools for exploring distance matrices using circular plots.☆32Jul 4, 2017Updated 8 years ago
- DeePhys was created to facilitate the analysis of extracellular recordings of neuronal cultures using high-density microelectrode arrays …☆15May 6, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Short read de novo assembler using de Bruijn graphs, as published in: D.R. Zerbino and E. Birney. 2008. Velvet: algorithms for de novo sh…☆297Oct 13, 2025Updated 7 months ago
- RNAdvisor is a docker-based wrapper that integrates other metrics and scoring functions for RNA 3D structure evaluation.☆18May 6, 2025Updated last year
- Analyze CRISPR and shRNA functional genetic screening data☆13Updated this week
- Quality control steps for GWAS☆26Aug 11, 2023Updated 2 years ago
- The Ensembl Compara Perl API and SQL schema☆56May 21, 2026Updated 2 weeks ago
- Genome Annotation Library - A perl toolkit for working with SO compliant genome annotations☆17Feb 5, 2025Updated last year
- fastq quality assessment and filtering tool☆17Dec 10, 2022Updated 3 years ago