*DEPRECATED* Job management for the Ensembl Genebuild pipeline
☆62Feb 29, 2024Updated 2 years ago
Alternatives and similar repositories for ensembl-pipeline
Users that are interested in ensembl-pipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Modules to interface with tools used in Ensembl Gene Annotation Process and scripts to run pipelines☆18Updated this week
- File parsing and writing code for Ensembl☆10Apr 9, 2026Updated 6 months ago
- The code to run an Ensembl website☆22Sep 9, 2026Updated last month
- ☆11Aug 6, 2019Updated 7 years ago
- ☆21Jul 30, 2026Updated 2 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Trinity RNA-Seq de novo transcriptome assembly☆903Apr 23, 2026Updated 5 months ago
- Experiments for "Scaling read aligners to hundreds of threads on general-purpose processors"☆11Jun 8, 2018Updated 8 years ago
- Ensembl Funcgen Perl API and SQL schema☆15Jul 21, 2025Updated last year
- A unified and modular interface to homology modelling software☆12Sep 27, 2023Updated 3 years ago
- ☆10Oct 17, 2019Updated 6 years ago
- MIRROR OF: The European Molecular Biology Open Software Suite (from git://anonscm.debian.org/debian-med/emboss.git)☆34Feb 18, 2022Updated 4 years ago
- Gordon's Text utils Library☆10Apr 11, 2022Updated 4 years ago
- Amino-Acid Sequence Annotation Predictor (ASAP)☆25May 13, 2020Updated 6 years ago
- DeePhys was created to facilitate the analysis of extracellular recordings of neuronal cultures using high-density microelectrode arrays …☆15May 6, 2026Updated 5 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- GEMTools main repository☆17Jun 21, 2022Updated 4 years ago
- 是基础也是综合(一系列对象及函数,需要细致的讲解)☆30Apr 9, 2016Updated 10 years ago
- A Shiny tool to define the cell-type of action by integrating single cell expression data with GWAS☆12Nov 1, 2018Updated 7 years ago
- ☆24May 26, 2020Updated 6 years ago
- RNAdvisor is a docker-based wrapper that integrates other metrics and scoring functions for RNA 3D structure evaluation.☆18May 6, 2025Updated last year
- gTaxon - a fast cross-platform NCBI taxonomy data querying (gi2taxid, taxid2taxon, name2taxid, LCA) tool, with cmd client and REST API se…☆14Jul 24, 2016Updated 10 years ago
- various sources and scripts for genomic research software☆10May 11, 2015Updated 11 years ago
- The Ensembl Compara Perl API and SQL schema☆56Updated this week
- Pipeline for RNA and DNA integrated analysis for somatic mutation detection☆13Oct 1, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- From the comparison of two extant genomes and corresponding gene families, PhylDiag detects conserved segments, i.e. segments of chromoso…☆15Aug 7, 2023Updated 3 years ago
- A Package for Ribosome Profiling Data Analysis☆18Jan 17, 2026Updated 8 months ago
- Differential analysis for ChIP-seq with biological replicates☆35Jan 5, 2022Updated 4 years ago
- ☆23Dec 23, 2024Updated last year
- ☆15Apr 19, 2018Updated 8 years ago
- IHC-image analysis workflow☆25May 29, 2018Updated 8 years ago
- circular RNA analysis toolset☆91Sep 8, 2024Updated 2 years ago
- Quality control steps for GWAS☆27Aug 11, 2023Updated 3 years ago
- The Ensembl Variation Perl API and SQL schema☆30Sep 23, 2026Updated 2 weeks ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆20Sep 22, 2015Updated 11 years ago
- ☆89Nov 11, 2020Updated 5 years ago
- Short read de novo assembler using de Bruijn graphs, as published in: D.R. Zerbino and E. Birney. 2008. Velvet: algorithms for de novo sh…☆297Oct 13, 2025Updated 11 months ago
- Codes for the lettuce resequencing project in 2020☆32Jun 28, 2021Updated 5 years ago
- Analyze CRISPR and shRNA functional genetic screening data☆13Jun 3, 2026Updated 4 months ago
- Genome Annotation Library - A perl toolkit for working with SO compliant genome annotations☆17Feb 5, 2025Updated last year
- Granular Functional Filtering (Gruffi) to isolate stressed cells☆14Nov 7, 2024Updated last year