Ensembl / ensembl-io
File parsing and writing code for Ensembl
☆10Updated 3 months ago
Alternatives and similar repositories for ensembl-io
Users that are interested in ensembl-io are comparing it to the libraries listed below
Sorting:
- Git repo for Bio::HTS module on CPAN, providing Perl links into HTSlib☆24Updated 4 months ago
- Test data for MultiQC.☆22Updated 2 weeks ago
- A Teaching Engine for Genomics☆12Updated 4 years ago
- The Ensembl Variation Perl API and SQL schema☆28Updated 2 weeks ago
- Annotating principal splice isoforms☆14Updated 7 months ago
- Modules to interface with tools used in Ensembl Gene Annotation Process and scripts to run pipelines☆18Updated last week
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 6 years ago
- WDL workflow for population variant calling using htsget, DeepVariant, and GLnexus☆10Updated 6 years ago
- ☆26Updated 2 years ago
- reference free variant assembly☆33Updated last year
- conda recipes for genomic data☆85Updated 3 years ago
- full taxonomer cython repository☆22Updated 5 years ago
- An interactive learning resource for next-generation sequencing (NGS) techniques☆29Updated 6 years ago
- abPOA: an SIMD-based C library for fast partial order alignment using adaptive band☆13Updated last year
- ☆13Updated 7 years ago
- This GCI/VCI 1.0 platform has now been retired, and replaced with our new 2.0 platform:☆25Updated 2 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- Whole Genome Sequenceing Structural Variation Pipelines☆16Updated 6 years ago
- NovoGraph: building whole genome graphs from long-read-based de novo assemblies☆45Updated 4 years ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated 8 months ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 3 months ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆30Updated 2 years ago
- An approximate sequence pattern matcher for FASTQ/FASTA files.☆30Updated 9 years ago
- ☆51Updated 5 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆34Updated 2 years ago
- A Perl extension and collection of utilities for Next-Generation Sequencing (NGS) data analysis☆23Updated 6 years ago
- ☆36Updated last month
- ☆12Updated 2 years ago
- Genetic Relationship And Fingerprinting☆14Updated 2 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago