Alternatives and similar repositories for ensembl-io:

Users that are interested in ensembl-io are comparing it to the libraries listed below

• Ensembl / Bio-DB-HTS
  Git repo for Bio::HTS module on CPAN, providing Perl links into HTSlib
  ☆24Updated last week
• NBISweden / workshop-genome_assembly
  ☆13Updated 4 years ago
• KnowEnG / TeachEnG
  A Teaching Engine for Genomics
  ☆11Updated 3 years ago
• sequencing / NxTrim
  Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.
  ☆54Updated 6 years ago
• Ensembl / ensembl-analysis
  Modules to interface with tools used in Ensembl Gene Annotation Process and scripts to run pipelines
  ☆17Updated last month
• TheJacksonLaboratory / SVE
  ☆51Updated 5 years ago
• karel-brinda / ococo
  Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.
  ☆47Updated 6 years ago
• KnowEnG / SequencEnG
  An interactive learning resource for next-generation sequencing (NGS) techniques
  ☆27Updated 6 years ago
• The-Sequence-Ontology / GAL
  Genome Annotation Library - A perl toolkit for working with SO compliant genome annotations
  ☆17Updated 2 years ago
• s-andrews / BamQC
  Mapped QC analysis program
  ☆42Updated 6 years ago
• ncbi / magicblast
  ☆35Updated last year
• ConesaLab / SQANTI
  ☆10Updated last year
• chanzuckerberg / idseq-workflows
  Portable WDL workflows for IDseq production pipelines
  ☆31Updated 2 years ago
• MultiQC / test-data
  Test data for MultiQC.
  ☆20Updated this week
• benedictpaten / sonLib
  Small general purpose library for C and Python with focus on bioinformatics.
  ☆29Updated 2 years ago
• SexChrLab / XYalign
  ☆23Updated 5 years ago
• gogetdata / ggd-recipes
  conda recipes for genomic data
  ☆85Updated 3 years ago
• Yandell-Lab / taxonomer_0.5
  full taxonomer cython repository
  ☆22Updated 5 years ago
• Xinglab / lr2rmats
  Long read to rMATS
  ☆31Updated last year
• Ensembl / ensembl-variation
  The Ensembl Variation Perl API and SQL schema
  ☆27Updated last week
• ClinGen / clincoded
  This GCI/VCI 1.0 platform has now been retired, and replaced with our new 2.0 platform:
  ☆25Updated 2 years ago
• jbelyeu / SV-plaudit
  Pipeline for structural variant image curation and analysis.
  ☆48Updated 3 years ago
• yangao07 / TideHunter
  TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain
  ☆27Updated 7 months ago
• lh3 / pre-pe
  Preprocessing paired-end reads produced with experiment-specific protocols
  ☆32Updated 6 years ago
• lbcb-sci / ra
  Assembler for raw de novo genome assembly of long uncorrected reads.
  ☆37Updated 5 years ago
• GATB / MindTheGap
  MindTheGap is a SV caller for short read sequencing data dedicated to insertion variants (all sizes and types). It can also be used as a …
  ☆38Updated 2 years ago
• IARCbioinfo / alignment-nf
  Whole Exome/Whole Genome Sequencing alignment pipeline
  ☆28Updated 4 months ago
• gogetdata / ggd-cli
  The command-line interface to GGD
  ☆42Updated 2 years ago
• dzerbino / oases
  De novo transcriptome assembler for short reads
  ☆62Updated 6 years ago
• sanger-pathogens / gff3toembl
  Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI
  ☆29Updated 6 years ago