Alternatives and similar repositories for ensembl-analysis

Users that are interested in ensembl-analysis are comparing it to the libraries listed below

• marbl / SALSA
  SALSA: A tool to scaffold long read assemblies with Hi-C data
  ☆188Updated last year
• bcgsc / RNA-Bloom
  reference-free transcriptome assembly for short and long reads
  ☆107Updated last year
• NAL-i5K / GFF3toolkit
  Python programs for processing GFF3 files
  ☆102Updated last year
• MariaNattestad / Assemblytics
  Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…
  ☆145Updated 5 months ago
• nanoporetech / pychopper
  A tool to identify, orient, trim and rescue full length cDNA reads
  ☆83Updated 3 years ago
• dentearl / mafTools
  Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.
  ☆109Updated 3 years ago
• malonge / RaGOO
  RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag
  ☆174Updated 4 years ago
• rrwick / Deepbinner
  a signal-level demultiplexer for Oxford Nanopore reads
  ☆126Updated 4 years ago
• nanoporetech / pipeline-structural-variation
  Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data
  ☆114Updated 4 years ago
• cpockrandt / genmap
  GenMap - Fast and Exact Computation of Genome Mappability
  ☆113Updated last year
• EI-CoreBioinformatics / mikado
  Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to s…
  ☆105Updated last week
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆117Updated 6 months ago
• Psy-Fer / SquiggleKit
  SquiggleKit: A toolkit for manipulating nanopore signal data
  ☆128Updated last year
• GenomiqueENS / toulligQC
  A post sequencing QC tool for Oxford Nanopore sequencers
  ☆103Updated 4 months ago
• marbl / meryl
  A genomic k-mer counter (and sequence utility) with nice features.
  ☆148Updated 5 months ago
• bergmanlab / mcclintock
  Meta-pipeline to identify transposable element insertions using next generation sequencing data
  ☆105Updated 6 months ago
• yfukasawa / LongQC
  LongQC is a tool for the data quality control of the PacBio and ONT long reads.
  ☆177Updated 2 years ago
• wdecoster / methplotlib
  Plotting tools for nanopore methylation data
  ☆95Updated 4 months ago
• biocorecrg / master_of_pores
  Nextflow pipeline for analysis of direct RNA Nanopore reads
  ☆109Updated 3 weeks ago
• Griffan / VerifyBamID
  VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.
  ☆99Updated last year
• DecodeGenetics / graphtyper
  Population-scale genotyping using pangenome graphs
  ☆195Updated 11 months ago
• wdecoster / nanostat
  Create statistic summary of an Oxford Nanopore read dataset
  ☆125Updated 3 years ago
• Gabaldonlab / redundans
  Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.
  ☆163Updated 8 months ago
• ArimaGenomics / mapping_pipeline
  Mapping pipeline for data generated using Arima-HiC
  ☆81Updated last year
• yjx1217 / simuG
  simuG: a general-purpose genome simulator
  ☆96Updated 5 months ago
• wdecoster / nanoQC
  Quality control tools for nanopore sequencing data
  ☆111Updated last year
• adamewing / methylartist
  Tools for plotting methylation data in various ways
  ☆166Updated 3 weeks ago
• ComparativeGenomicsToolkit / hal
  Hierarchical Alignment Format
  ☆173Updated last week
• EarlhamInst / KAT
  The K-mer Analysis Toolkit (KAT) contains a number of tools that analyse and compare K-mer spectra.
  ☆218Updated 3 years ago
• EVidenceModeler / EVidenceModeler
  source code for EVM
  ☆119Updated last year