Modules to interface with tools used in Ensembl Gene Annotation Process and scripts to run pipelines
☆18Jul 21, 2026Updated this week
Alternatives and similar repositories for ensembl-analysis
Users that are interested in ensembl-analysis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- File parsing and writing code for Ensembl☆10Apr 9, 2026Updated 3 months ago
- *DEPRECATED* Job management for the Ensembl Genebuild pipeline☆62Feb 29, 2024Updated 2 years ago
- The code to run an Ensembl website☆22Jun 24, 2026Updated last month
- The Genomics Tertiary Analysis and Machine Learning Using Amazon SageMaker solution creates a scalable environment in AWS to develop mach…☆11Jul 7, 2023Updated 3 years ago
- Dockerfiles to build Biopython instances☆28Aug 30, 2016Updated 9 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A noSQL database based on blockchain technology☆16Aug 2, 2021Updated 4 years ago
- BioPerl scripts and utilities☆11Sep 2, 2025Updated 10 months ago
- EnsEMBL Hive - a system for creating and running pipelines on a distributed compute resource☆56Jan 6, 2026Updated 6 months ago
- The Ensembl Core Perl API and SQL schema☆84Jun 24, 2026Updated last month
- gTaxon - a fast cross-platform NCBI taxonomy data querying (gi2taxid, taxid2taxon, name2taxid, LCA) tool, with cmd client and REST API se…☆14Jul 24, 2016Updated 10 years ago
- ☆11Oct 8, 2018Updated 7 years ago
- various sources and scripts for genomic research software☆10May 11, 2015Updated 11 years ago
- The Ensembl Compara Perl API and SQL schema☆56Jun 29, 2026Updated 3 weeks ago
- ☆20Sep 22, 2015Updated 10 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆15Jul 3, 2018Updated 8 years ago
- Consensus genome annotation using OMA☆32Jan 14, 2026Updated 6 months ago
- a web-based R shiny application that wraps DESeq2 R package☆13Apr 19, 2020Updated 6 years ago
- A Python package for Biopython that gives feature annotations from GenBank records a new and better life☆14Apr 27, 2016Updated 10 years ago
- Python library for work with BioCreative files☆13Mar 28, 2018Updated 8 years ago
- The BioPerl Web site: http://bioperl.org☆14Aug 29, 2019Updated 6 years ago
- Simulation code of the paper "Persistent Memory in Single Node Delay-Coupled Reservoir Computing"☆17Aug 4, 2021Updated 4 years ago
- Command Line Interface for Genomes on a Tree.☆14Mar 15, 2026Updated 4 months ago
- A FASTQ lossless compression algorithm especially designed for nanopore sequencing FASTQ files.☆10Jul 2, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Command line tool to predict phenotype from VCF (gets models from pheno-server-21)☆16Jan 1, 2016Updated 10 years ago
- High performance multiplexed user fuse mounting☆20Jun 19, 2026Updated last month
- Creates Venn diagrams for OrthoMCL output☆17Aug 9, 2017Updated 8 years ago
- ☆23Sep 6, 2016Updated 9 years ago
- SV genotyper for long reads with a variation graph☆16Apr 15, 2026Updated 3 months ago
- ☆13Apr 5, 2024Updated 2 years ago
- Datastores for reads, not your papa's FASTQ files.☆11Jul 28, 2023Updated 2 years ago
- A box of genomics tools☆22Jun 10, 2026Updated last month
- My fork of the official Biopython repository, used for experimental branches etc☆20Jul 8, 2026Updated 2 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- PDF Word Counter☆17Nov 15, 2022Updated 3 years ago
- Amino-Acid Sequence Annotation Predictor (ASAP)☆25May 13, 2020Updated 6 years ago
- Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics☆24May 30, 2023Updated 3 years ago
- A project to facilitate construction of high-performance neural simulations.☆32Jul 3, 2021Updated 5 years ago
- Microbial Whole Genome Sequence data analysis labs for 2014☆29Jul 31, 2020Updated 5 years ago
- This repository contains the code developed for the NanOlympicsMod project.☆12Jan 29, 2024Updated 2 years ago
- A Rust implementation of sliding window stats over fastas.☆15Jun 4, 2026Updated last month