Ensembl / ensembl-analysisLinks
Modules to interface with tools used in Ensembl Gene Annotation Process and scripts to run pipelines
☆18Updated this week
Alternatives and similar repositories for ensembl-analysis
Users that are interested in ensembl-analysis are comparing it to the libraries listed below
Sorting:
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆188Updated last year
- Create statistic summary of an Oxford Nanopore read dataset☆131Updated 3 years ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆104Updated 8 months ago
- Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…☆146Updated 7 months ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆173Updated 4 years ago
- Plotting tools for nanopore methylation data☆94Updated 6 months ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆84Updated 3 years ago
- A genomic k-mer counter (and sequence utility) with nice features.☆159Updated 7 months ago
- Analysis components from Oxford Nanopore Research☆96Updated last year
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆109Updated 3 years ago
- reference-free transcriptome assembly for short and long reads☆108Updated 2 years ago
- Python programs for processing GFF3 files☆102Updated last month
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆121Updated 8 months ago
- Long read production pipelines☆151Updated this week
- Comparison of multiple long read datasets☆153Updated 2 months ago
- A post sequencing QC tool for Oxford Nanopore sequencers☆106Updated this week
- Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to s…☆108Updated last week
- Dotplot large Genomes in an Interactive, Efficient and Simple way☆113Updated 3 weeks ago
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆102Updated last year
- Research release basecalling models and configurations☆117Updated 8 months ago
- Chromosome-level scaffolding using multiple references☆164Updated last year
- Pairwise SNP distance matrix from a FASTA sequence alignment☆151Updated last month
- Software for clustering de novo assembled transcripts and counting overlapping reads☆76Updated 4 years ago
- ☆180Updated 3 months ago
- Dfam Transposable Element Tools Docker container.☆101Updated last month
- Mapping pipeline for data generated using Arima-HiC☆81Updated last year
- 🌈Scaffold genome sequence assemblies using linked or long read sequencing data☆95Updated last year
- Hierarchical Alignment Format☆174Updated 2 weeks ago
- An accurate and ultra-fast hybrid genome assembler☆87Updated last year
- Identify and find telomeres, or telomeric repeats in a genome.☆158Updated 2 months ago