Alternatives and similar repositories for ensembl-analysis:

Users that are interested in ensembl-analysis are comparing it to the libraries listed below

• phasegenomics / FALCON-Phase
  FALCON-Phase integrates PacBio long-read assemblies with Phase Genomics Hi-C data to create phased, diploid, chromosome-scale scaffolds
  ☆74Updated 4 years ago
• nhansen / SVanalyzer
  Tools for the analysis of structural variation in genomes
  ☆78Updated last year
• dentearl / mafTools
  Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.
  ☆106Updated 2 years ago
• conchoecia / pauvre
  Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.
  ☆54Updated 4 months ago
• NBISweden / pipelines-nextflow
  A set of workflows written in Nextflow for Genome Annotation.
  ☆45Updated 9 months ago
• DecodeGenetics / Ratatosk
  Hybrid error correction of long reads using colored de Bruijn graphs
  ☆100Updated 6 months ago
• vpc-ccg / haslr
  A fast tool for hybrid genome assembly of long and short reads
  ☆77Updated 4 years ago
• bioinformatics-centre / BayesTyper
  A method for variant graph genotyping based on exact alignment of k-mers
  ☆86Updated 6 years ago
• mikolmogorov / Ragout
  Chromosome-level scaffolding using multiple references
  ☆159Updated 6 months ago
• bcgsc / ntJoin
  🔗Genome assembly scaffolder using minimizer graphs
  ☆83Updated 6 months ago
• eldariont / svim-asm
  Structural Variant Identification Method using Genome Assemblies
  ☆107Updated 2 years ago
• marbl / meryl
  A genomic k-mer counter (and sequence utility) with nice features.
  ☆134Updated last month
• bergmanlab / mcclintock
  Meta-pipeline to identify transposable element insertions using next generation sequencing data
  ☆97Updated last year
• Magdoll / Cogent
  Coding Genome Reconstruction using Iso-Seq data
  ☆60Updated 3 years ago
• adigenova / wengan
  An accurate and ultra-fast hybrid genome assembler
  ☆83Updated 11 months ago
• arangrhie / merfin
  Evaluate variant calls and its combination with k-mer multiplicity
  ☆66Updated 2 years ago
• mcfrith / last-genome-alignments
  ☆60Updated last year
• peterjc / picobio
  Miscellaneous Bioinformatics scripts etc mostly in Python
  ☆45Updated 3 weeks ago
• NCBI-Hackathons / TheHumanPangenome
  A Strategy for Building and Using a Human Reference Pangenome
  ☆70Updated 4 years ago
• gatech-genemark / ProtHint
  Protein hint generation pipeline for gene finding in eukaryotic genomes
  ☆56Updated last year
• harvardinformatics / TranscriptomeAssemblyTools
  A collection of scripts for processing fastq files in ways to improve de novo transcriptome assemblies, and for evaluating those assembli…
  ☆48Updated last year
• nf-core / pangenome
  Renders a collection of sequences into a pangenome graph. https://doi.org/10.1093/bioinformatics/btae609.
  ☆85Updated last month
• sestaton / Transposome
  A toolkit for annotation of transposable element families from unassembled sequence reads
  ☆30Updated last year
• NAL-i5K / GFF3toolkit
  Python programs for processing GFF3 files
  ☆95Updated last year
• dzerbino / oases
  De novo transcriptome assembler for short reads
  ☆62Updated 7 years ago
• yechengxi / DBG2OLC
  A genome assembler that reduces the computational time of human genome assembly from 400,000 CPU hours to 2,000 CPU hours, utilizing long…
  ☆65Updated 4 years ago
• wdecoster / nano-snakemake
  A snakemake pipeline for SV analysis from nanopore genome sequencing
  ☆51Updated 5 years ago
• bcgsc / arcs
  🌈Scaffold genome sequence assemblies using linked or long read sequencing data
  ☆93Updated 4 months ago
• mobinasri / flagger
  Evaluating genome assemblies
  ☆88Updated 3 weeks ago
• tanghaibao / allhic
  Genome scaffolding based on HiC data in heterozygous and high ploidy genomes
  ☆60Updated 3 months ago