mccoy-lab / LD-PGTAView external linksLinks
Linkage disequlibrium-informed PGT-A (LD-PGTA). A package for detecting genotypic signatures of aneuploidy from extremely low-coverage sequence data.
☆18Oct 10, 2022Updated 3 years ago
Alternatives and similar repositories for LD-PGTA
Users that are interested in LD-PGTA are comparing it to the libraries listed below
Sorting:
- 16S rRNA marker gene upstream and dowstream analysis tutorial for the UCT Hex cluster.☆11Jan 15, 2021Updated 5 years ago
- A tool for sample swap identification in high throughput sequencing studies☆10Mar 4, 2025Updated 11 months ago
- ☆11Aug 13, 2025Updated 6 months ago
- NiPTUNE. A Python library for NIPT analyses.☆12Nov 22, 2021Updated 4 years ago
- Automated pipeline for whole bacterial genome analysis based on snakemake☆12May 16, 2022Updated 3 years ago
- ☆13Jul 11, 2024Updated last year
- MeGAMerge (A tool to merge assembled contigs, long reads from metagenomic sequencing runs)☆14Dec 7, 2016Updated 9 years ago
- phenotype-based prioritization of candidate genes for human diseases☆65Jan 25, 2023Updated 3 years ago
- WISECONDOR (WIthin-SamplE COpy Number aberration DetectOR): Detect fetal trisomies and smaller CNV's in a maternal plasma sample using wh…☆47Apr 24, 2024Updated last year
- Somatic point mutation caller☆17Jul 8, 2016Updated 9 years ago
- Short reads aligner for NIPT/CNV☆16Oct 10, 2018Updated 7 years ago
- 肿瘤突变负荷学习笔记(tumor mutation burden)☆16Dec 10, 2019Updated 6 years ago
- scripts to automatically update ANNOVAR db☆18Nov 17, 2021Updated 4 years ago
- VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants☆19Mar 10, 2018Updated 7 years ago
- Phylogeny-based Contamination Detection in Mitochondrial and Whole-Genome Sequencing Studies☆18Jun 14, 2023Updated 2 years ago
- An automated assembly pipeline for microbial genomes☆19Jan 15, 2026Updated last month
- R Package for Non Invasive Prenatal Testing (NIPT) analysis☆46Nov 5, 2019Updated 6 years ago
- repository of the 3-day course "First steps with Python in Life Sciences" from SIB-training☆65Jan 6, 2026Updated last month
- Phenotype driven gene prioritization for HPO☆51Jul 26, 2021Updated 4 years ago
- Accurate read-based metagenome characterization using a hierarchical suite of unique signatures. Please visit our homepage:☆23Jan 29, 2019Updated 7 years ago
- A bioinformatics software tool for clinical interpretation of genetic variants by the 2015 ACMG-AMP guideline☆206May 28, 2023Updated 2 years ago
- ☆23Jun 29, 2018Updated 7 years ago
- ☆20Oct 5, 2022Updated 3 years ago
- Assign taxonomic ranks based on evolutionary divergence.☆23Mar 28, 2022Updated 3 years ago
- WisecondorX — An evolved WISECONDOR☆112Nov 26, 2025Updated 2 months ago
- This is the official development repository for BaseVar, which call variants for large-scale ultra low-pass (<1.0x) WGS data, especially …☆27Jul 28, 2025Updated 6 months ago
- a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads☆233Feb 17, 2022Updated 3 years ago
- Making whole bacterial genome sequencing data analysis easy☆114Apr 22, 2025Updated 9 months ago
- Repository for Cibersortx☆62Mar 18, 2021Updated 4 years ago
- An R package to infer and analyze synteny networks from protein sequences☆36Jul 23, 2025Updated 6 months ago
- CPIC Data definitions and code to use that data☆32Feb 5, 2026Updated last week
- PathOS is a clinical application for filtering, analysing and reporting on NGS variants☆29Mar 30, 2021Updated 4 years ago
- metaX: a flexible and comprehensive software for processing omics data.☆26Jun 16, 2023Updated 2 years ago
- detection of duplications and deletions using Python based machine learning techniques☆28Jul 22, 2019Updated 6 years ago
- Exploring microbial patterns through subtle nucleotide variation within 16S rRNA gene tag sequences of closely related taxa☆41Jun 24, 2024Updated last year
- Please see https://github.com/chanzuckerberg/czid-workflows for the latest version of CZ ID workflows.☆27Jan 10, 2022Updated 4 years ago
- Microsatellite Analysis for Normal-Tumor InStability☆76Jul 14, 2022Updated 3 years ago
- HaploGrep - mtDNA haplogroup classification. Supporting rCRS and RSRS.☆77Feb 28, 2023Updated 2 years ago
- Simplify snpEff annotations for interesting cases☆22Feb 18, 2019Updated 6 years ago