Linkage disequlibrium-informed PGT-A (LD-PGTA). A package for detecting genotypic signatures of aneuploidy from extremely low-coverage sequence data.
☆17Oct 10, 2022Updated 3 years ago
Alternatives and similar repositories for LD-PGTA
Users that are interested in LD-PGTA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Streamlined duo/trio analysis and pedigree haplotyping: from VCF to interactive HTML☆15Oct 30, 2024Updated last year
- ☆11Mar 23, 2026Updated last month
- NiPTUNE. A Python library for NIPT analyses.☆11Nov 22, 2021Updated 4 years ago
- WISECONDOR (WIthin-SamplE COpy Number aberration DetectOR): Detect fetal trisomies and smaller CNV's in a maternal plasma sample using wh…☆46Apr 24, 2024Updated 2 years ago
- A tool for sample swap identification in high throughput sequencing studies☆10Mar 4, 2025Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Basic, no assumptions, multi-pileup☆24Mar 26, 2014Updated 12 years ago
- fastVEP: High-performance Variant Effect Predictor in Rust☆79May 1, 2026Updated last week
- Short reads aligner for NIPT/CNV☆16Oct 10, 2018Updated 7 years ago
- 16S rRNA marker gene upstream and dowstream analysis tutorial for the UCT Hex cluster.☆12Jan 15, 2021Updated 5 years ago
- WisecondorX — An evolved WISECONDOR☆114Apr 13, 2026Updated 3 weeks ago
- ☆13Mar 17, 2026Updated last month
- Simplify snpEff annotations for interesting cases☆22Feb 18, 2019Updated 7 years ago
- MeGAMerge (A tool to merge assembled contigs, long reads from metagenomic sequencing runs)☆14Dec 7, 2016Updated 9 years ago
- phenotype-based prioritization of candidate genes for human diseases☆64Jan 25, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants☆19Mar 10, 2018Updated 8 years ago
- Phylogeny-based Contamination Detection in Mitochondrial and Whole-Genome Sequencing Studies☆17Jun 14, 2023Updated 2 years ago
- Automated pipeline for whole bacterial genome analysis based on snakemake☆12May 16, 2022Updated 3 years ago
- R Package for Non Invasive Prenatal Testing (NIPT) analysis☆46Nov 5, 2019Updated 6 years ago
- a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads☆235Feb 17, 2022Updated 4 years ago
- scripts to automatically update ANNOVAR db☆19Nov 17, 2021Updated 4 years ago
- CPIC Data definitions and code to use that data☆31May 1, 2026Updated last week
- ☆24Nov 16, 2023Updated 2 years ago
- Inspired from the paper "Show Attend and Tell". This project's aim was to train a neural network which can provide descriptive text for a…☆13Feb 7, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A bioinformatics software tool for clinical interpretation of genetic variants by the 2015 ACMG-AMP guideline☆207May 28, 2023Updated 2 years ago
- 肿瘤突变负荷学习笔记(tumor mutation burden)☆16Dec 10, 2019Updated 6 years ago
- This is the official development repository for BaseVar, which call variants for large-scale ultra low-pass (<1.0x) WGS data, especially …☆28Jul 28, 2025Updated 9 months ago
- Supplementary files for our Aneuploidy Detection paper☆10Jul 5, 2018Updated 7 years ago
- detection of duplications and deletions using Python based machine learning techniques☆28Jul 22, 2019Updated 6 years ago
- Peak calling tool for CLIP-seq data☆14Apr 7, 2021Updated 5 years ago
- repository of the 3-day course "First steps with Python in Life Sciences" from SIB-training☆66Apr 7, 2026Updated last month
- ☆16Aug 8, 2025Updated 9 months ago
- Assign taxonomic ranks based on evolutionary divergence.☆23Mar 3, 2026Updated 2 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Process m6A/MeRIP-seq data in a single or batch job mode☆21Apr 28, 2020Updated 6 years ago
- ☆20Oct 5, 2022Updated 3 years ago
- Probabilistic single-individual haplotyping☆10Mar 15, 2019Updated 7 years ago
- An automated assembly pipeline for microbial genomes☆19Jan 15, 2026Updated 3 months ago
- http://tinyurl.com/cruk-shiny☆10Sep 13, 2017Updated 8 years ago
- Phenotype driven gene prioritization for HPO☆51Jul 26, 2021Updated 4 years ago
- Complex structural variant visualization for HiFi sequencing data☆48Oct 24, 2025Updated 6 months ago