Edinburgh-Genome-Foundry / python_codon_tables
Codon usage tables in code-friendly format + Python bindings
☆37Updated this week
Alternatives and similar repositories for python_codon_tables
Users that are interested in python_codon_tables are comparing it to the libraries listed below
Sorting:
- Find common blocks and differences between DNA sequences☆42Updated last month
- Python Implementation of Codon Adaption Index☆37Updated 2 years ago
- RNA secondary structure/sequence profiles for homology search and alignment☆109Updated 6 months ago
- ☆127Updated 8 months ago
- A bioinformatics best-practice analysis pipeline for epitope prediction and annotation☆44Updated last week
- a pipeline to build similarity maps of protein space☆34Updated 5 months ago
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆36Updated 8 months ago
- Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies☆57Updated this week
- sensitive and precise assembly of short sequencing reads☆155Updated 7 months ago
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆81Updated 5 months ago
- Logan Unitigs and Contigs☆131Updated this week
- MSA(Multiple Sequence Alignment) visualization python package for sequence analysis☆125Updated 5 months ago
- A Rich renderable for viewing Multiple Sequence Alignments in the terminal.☆84Updated 2 years ago
- Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.☆31Updated 2 months ago
- Software for predicting translation initiation rates in bacteria☆22Updated 5 months ago
- Discovery of conserved gene clusters in multiple genomes☆79Updated last month
- software for the analysis and visualization of deep mutational scanning data☆34Updated 2 years ago
- nucleic acid folding☆92Updated 9 months ago
- A PCR primer tool for DNA assembly flows☆32Updated last year
- Python library to visualize circular plasmid maps☆26Updated 3 years ago
- Protein 3D structure prediction pipeline☆80Updated this week
- A Pure-Python parser of HMMER3 output☆17Updated 7 months ago
- UniProt Id Mapping through API☆31Updated 7 months ago
- CBMPy is a Python based platform for constraint based modelling and analysis.☆19Updated last year
- Fast and flexible ORF finder☆69Updated 3 years ago
- G4Hunter (2012_2015)- IECB - Bordeaux☆13Updated 5 years ago
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆42Updated 2 months ago
- CCTyper: Automatic detection and subtyping of CRISPR-Cas operons☆101Updated last year
- A genome browser in your Jupyter notebook☆31Updated this week
- A Python package for mapping sequence aligned data onto protein structures☆35Updated 3 years ago