Edinburgh-Genome-Foundry / python_codon_tablesLinks
Codon usage tables in code-friendly format + Python bindings
β42Updated 8 months ago
Alternatives and similar repositories for python_codon_tables
Users that are interested in python_codon_tables are comparing it to the libraries listed below
Sorting:
- π€ Python biolab automation library: parsers, report generators, picklist simulators, and moreβ46Updated 8 months ago
- Find common blocks and differences between DNA sequencesβ42Updated 3 months ago
- Simple cloning simulator (Golden Gate etc.) for single and combinatorial assembliesβ64Updated 8 months ago
- nucleic acid foldingβ110Updated 5 months ago
- A bioinformatics best-practice analysis pipeline for epitope prediction and annotationβ50Updated last week
- Python Implementation of Codon Adaption Indexβ37Updated 3 years ago
- A route planner for DNA assemblyβ36Updated 8 months ago
- Webserver and command line tool for annotating engineered plasmidsβ136Updated 6 months ago
- A Rich renderable for viewing Multiple Sequence Alignments in the terminal.β85Updated 3 years ago
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApyβ48Updated last month
- Visualise RNA secondary structure in consistent, reproducible and recognisable layoutsβ80Updated this week
- ReFramed: metabolic modeling packageβ63Updated 4 months ago
- D3.js based visualizations of cobrapy metabolic modelsβ50Updated 5 years ago
- A collection of Web Service Clients to consume EBI's Job Dispatcher tools via REST APIsβ55Updated last year
- BGC Detection and Classification Using Deep Learningβ157Updated 2 years ago
- iCodon customizes gene expression based on the codon compositionβ15Updated 2 years ago
- An RNA manipulation library.β56Updated last year
- Just a collection of (often poor) scripts to do various bits of bioinformatics stuff I find myself needing to do.β63Updated 5 years ago
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysisβ43Updated 3 weeks ago
- Deep learning embedding for nucleotide sequencesβ19Updated 10 months ago
- A Python project to read and write Snapgene *.dna into dict, json, and biopython object.β45Updated 5 years ago
- A PCR primer tool for DNA assembly flowsβ33Updated last year
- RNA secondary structure/sequence profiles for homology search and alignmentβ123Updated last month
- Webserver and command line tool for annotating engineered plasmidsβ17Updated last year
- The Ribosome Binding Site (RBS) Calculator can predict the translation initiation rate of a protein coding sequence in bacteria and desigβ¦β61Updated 10 years ago
- Template-based RNA secondary structure visualizationβ27Updated last year
- Enzyme-constrained genome-scale models in pythonβ34Updated 2 years ago
- Protein 3D structure prediction pipelineβ95Updated last week
- Protein Sequence Annotation with Language Modelsβ27Updated last week
- A high-fidelity E. coli RNA-seq compendiumβ33Updated 4 years ago