Edinburgh-Genome-Foundry / python_codon_tablesLinks
Codon usage tables in code-friendly format + Python bindings
☆39Updated 5 months ago
Alternatives and similar repositories for python_codon_tables
Users that are interested in python_codon_tables are comparing it to the libraries listed below
Sorting:
- Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies☆62Updated 4 months ago
- A route planner for DNA assembly☆36Updated 4 months ago
- 🤖 Python biolab automation library: parsers, report generators, picklist simulators, and more☆45Updated 4 months ago
- Python Implementation of Codon Adaption Index☆37Updated 2 years ago
- Find common blocks and differences between DNA sequences☆42Updated 6 months ago
- nucleic acid folding☆103Updated last month
- A Rich renderable for viewing Multiple Sequence Alignments in the terminal.☆85Updated 3 years ago
- MSA(Multiple Sequence Alignment) visualization python package for sequence analysis☆154Updated 10 months ago
- Protein structure alignment and search algorithm☆73Updated this week
- A bioinformatics best-practice analysis pipeline for epitope prediction and annotation☆47Updated last week
- sensitive and precise assembly of short sequencing reads☆161Updated 11 months ago
- Webserver and command line tool for annotating engineered plasmids☆131Updated 2 months ago
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆46Updated last month
- Just a collection of (often poor) scripts to do various bits of bioinformatics stuff I find myself needing to do.☆61Updated 5 years ago
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆75Updated 2 months ago
- Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.☆35Updated last week
- Software for predicting translation initiation rates in bacteria☆29Updated 2 months ago
- Protein Sequence Annotation with Language Models☆24Updated 4 months ago
- BGC Detection and Classification Using Deep Learning☆154Updated last year
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆38Updated 4 months ago
- RNA secondary structure/sequence profiles for homology search and alignment☆114Updated 11 months ago
- Read DNA sequences from colourful Microsoft Word documents☆34Updated 4 months ago
- Deep learning embedding for nucleotide sequences☆19Updated 6 months ago
- Template-based RNA secondary structure visualization☆26Updated 10 months ago
- Webserver and command line tool for annotating engineered plasmids☆14Updated last year
- The Ribosome Binding Site (RBS) Calculator can predict the translation initiation rate of a protein coding sequence in bacteria and desig…☆57Updated 9 years ago
- An RNA manipulation library.☆56Updated last year
- A PCR primer tool for DNA assembly flows☆33Updated last year
- Nanopore Plasmid Sequencing☆33Updated 2 years ago
- A Python project to read and write Snapgene *.dna into dict, json, and biopython object.☆44Updated 5 years ago