Alternatives and similar repositories for SynBioPython:

Users that are interested in SynBioPython are comparing it to the libraries listed below

• Edinburgh-Genome-Foundry / DnaCauldron
  Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies
  ☆54Updated last year
• cdanielmachado / reframed
  ReFramed: metabolic modeling package
  ☆57Updated 6 months ago
• Edinburgh-Genome-Foundry / Plateo
  🤖 Python biolab automation library: parsers, report generators, picklist simulators, and more
  ☆42Updated 4 months ago
• mmcguffi / pLannotate
  Webserver and command line tool for annotating engineered plasmids
  ☆111Updated 10 months ago
• SynBioDex / pySBOL3
  Native python implementation of SBOL 3.0 specification
  ☆38Updated this week
• klamt-lab / straindesign
  StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy
  ☆41Updated this week
• Edinburgh-Genome-Foundry / codon-usage-tables
  Codon usage tables in code-friendly format + Python bindings
  ☆35Updated 2 weeks ago
• Lattice-Automation / seqfold
  nucleic acid folding
  ☆87Updated 6 months ago
• jclachance / BOFdat
  Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data
  ☆27Updated last year
• pydna-group / pydna
  Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning…
  ☆172Updated 2 weeks ago
• Arcadia-Science / ProteinCartography
  a pipeline to build similarity maps of protein space
  ☆31Updated 2 months ago
• ginkgobioworks / geckopy
  Enzyme-constrained genome-scale models in python
  ☆25Updated last year
• yachielab / QUEEN
  QUEEN: a framework to generate quinable and efficiently editable nucleotide sequence resources
  ☆41Updated this week
• SBRG / cobrame
  A COBRApy extension for genome-scale models of metabolism and expression (ME-models)
  ☆36Updated 6 years ago
• Edinburgh-Genome-Foundry / DnaWeaver
  A route planner for DNA assembly
  ☆31Updated last year
• mckennalab / Circuitseq
  Nanopore Plasmid Sequencing
  ☆32Updated last year
• SysBioChalmers / GECKO
  Toolbox for including enzyme constraints on a genome-scale model.
  ☆68Updated 3 months ago
• SBRG / precise-db
  A high-fidelity E. coli RNA-seq compendium
  ☆33Updated 3 years ago
• nf-core / proteinfold
  Protein 3D structure prediction pipeline
  ☆69Updated 2 weeks ago
• micom-dev / micom
  Python package to study microbial communities using metabolic modeling.
  ☆97Updated last week
• EddyRivasLab / infernal
  RNA secondary structure/sequence profiles for homology search and alignment
  ☆104Updated 3 months ago
• hsalis / Ribosome-Binding-Site-Calculator-v1.0
  The Ribosome Binding Site (RBS) Calculator can predict the translation initiation rate of a protein coding sequence in bacteria and desig…
  ☆53Updated 9 years ago
• pstjohn / d3flux
  D3.js based visualizations of cobrapy metabolic models
  ☆45Updated 4 years ago
• hiyama341 / teemi
  teemi: A Python package for reproducible and FAIR microbial strain construction. Simulate the entire dbtl-cycle, generate genetic parts, …
  ☆40Updated last month
• SysBioChalmers / RAVEN
  The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.
  ☆106Updated 3 weeks ago
• ViennaRNA / forgi
  An RNA manipulation library.
  ☆54Updated 11 months ago
• SysBioChalmers / Human-GEM
  The generic genome-scale metabolic model of Homo sapiens
  ☆104Updated this week
• BioSystemsUM / troppo
  Reconstruction algorithms for Python
  ☆23Updated 3 months ago
• urmi-21 / orfipy
  Fast and flexible ORF finder
  ☆66Updated 3 years ago
• althonos / rich-msa
  A Rich renderable for viewing Multiple Sequence Alignments in the terminal.
  ☆78Updated 2 years ago