mit-ll / AlphaSeq_Antibody_Dataset
Dataset with quantitative binding scores of scFv-format antibodies against SARS-CoV-2 target peptide
☆20Updated last year
Alternatives and similar repositories for AlphaSeq_Antibody_Dataset:
Users that are interested in AlphaSeq_Antibody_Dataset are comparing it to the libraries listed below
- Antibody paratope prediction using Graph Neural Networks with minimal feature vectors☆35Updated last year
- ☆80Updated 5 months ago
- KA-Search: Rapid and exhaustive sequence identity search of known antibodies☆22Updated 7 months ago
- Antibody-specific masked language model☆48Updated last year
- An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.☆24Updated 11 months ago
- ☆41Updated 5 months ago
- Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity☆27Updated 2 months ago
- ☆68Updated 4 years ago
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆65Updated 6 months ago
- The Patent and Literature Antibody Database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody s…☆24Updated 7 months ago
- Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks☆27Updated 8 months ago
- Fitness landscapes for antibodies☆61Updated last month
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆45Updated 2 months ago
- ☆45Updated last year
- HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles☆49Updated last week
- ☆49Updated 8 months ago
- pyFoldX: python bindings for FoldX.☆44Updated 3 years ago
- Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2☆38Updated 9 months ago
- ☆73Updated 2 weeks ago
- Antibody-Antigen Docking and Affinity Benchmark☆69Updated 4 years ago
- Efficient manipulation of protein structures in Python☆51Updated 3 months ago
- ☆26Updated 2 years ago
- Making Protein folding accessible to all!☆21Updated last year
- Tool for modelling the CDRs of antibodies☆47Updated 2 years ago
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆43Updated 2 weeks ago
- ☆54Updated 10 months ago
- Tool for rapid clustering of antibody models by the structure of their CDRs.☆20Updated 4 months ago
- ANTIPASTI (ANTIbody Predictor of Affinity from STructural Information) is a Deep Learning model that predicts the binding affinity of ant…☆25Updated 3 months ago
- A bunch of shell utilities for dealing the silent files☆56Updated 3 months ago
- ☆20Updated 2 years ago