Devil625 / Codon_OptimizationLinks
https://www.nature.com/articles/s41598-020-74091-z#Tab1
☆40Updated last year
Alternatives and similar repositories for Codon_Optimization
Users that are interested in Codon_Optimization are comparing it to the libraries listed below
Sorting:
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆90Updated last year
- Download pdb/protein structures using Uniprot id; This script will download related PDB files, extract chains(Optional), remove duplicate…☆43Updated last year
- ☆53Updated 2 months ago
- ☆21Updated 3 years ago
- Protein language model trained on coding DNA☆51Updated last year
- python tools for TCR:peptide-MHC modeling and analysis☆82Updated last year
- scripts and facilities for in-silico mutagenesis with FoldX☆61Updated 3 months ago
- Install alphafold on the local machine, get out of docker.☆104Updated 3 years ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆59Updated 4 years ago
- CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.☆40Updated last year
- A software package for computing features of peptides and proteins☆64Updated last year
- Tools for annotation, processing and ML for antibody sequences☆33Updated 2 weeks ago
- Geometric deep learning of protein–DNA binding specificity☆77Updated 7 months ago
- ColabFold protocol☆55Updated last year
- ☆91Updated last year
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆60Updated 6 months ago
- AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By add…☆108Updated last month
- ☆31Updated 3 years ago
- Generator and regressor neural networks for antimicrobial peptides☆25Updated last year
- A visualization software for antibody multi sequence alignment☆20Updated last year
- Evolutionary conservation estimation of residues or nucleotides☆51Updated 3 years ago
- Neural networks for deep mutational scanning data☆70Updated 4 months ago
- Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python☆30Updated 2 years ago
- Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening☆39Updated last year
- A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions☆102Updated 2 weeks ago
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆73Updated 2 years ago
- iLearnPlus is the first machine-learning platform with both graphical- and web-based user interface that enables the construction of auto…☆118Updated last year
- ☆38Updated 3 years ago
- ☆96Updated 4 months ago
- ☆51Updated last year