Devil625 / Codon_OptimizationLinks
https://www.nature.com/articles/s41598-020-74091-z#Tab1
☆41Updated last year
Alternatives and similar repositories for Codon_Optimization
Users that are interested in Codon_Optimization are comparing it to the libraries listed below
Sorting:
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆90Updated last year
- CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.☆42Updated last year
- ☆55Updated 5 months ago
- ☆21Updated 3 years ago
- Install alphafold on the local machine, get out of docker.☆103Updated 4 years ago
- Download pdb/protein structures using Uniprot id; This script will download related PDB files, extract chains(Optional), remove duplicate…☆46Updated last year
- Singularity recipe for AlphaFold☆37Updated last year
- PyMOL extension to color AlphaFold structures by confidence (pLDDT).☆118Updated last year
- scripts and facilities for in-silico mutagenesis with FoldX☆65Updated last week
- PLMSearch enables accurate and fast homologous protein search with only sequences as input☆77Updated 4 months ago
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆121Updated last year
- Protein language model trained on coding DNA☆53Updated last year
- AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By add…☆109Updated last month
- Geometric deep learning of protein–DNA binding specificity☆77Updated 9 months ago
- Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python☆30Updated 2 years ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆60Updated 4 years ago
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆61Updated 9 months ago
- RaptorX-Property: a Standalone Package for Protein Structure Property Prediction☆19Updated 6 years ago
- A domain parser for Alphafold models☆46Updated 2 years ago
- Fast deep learning methods for large-scale protein-protein interaction screening☆114Updated 5 months ago
- ☆32Updated 3 years ago
- Feature map and function annotation of Proteins☆34Updated last year
- A tool for protein and protein complex structure prediction.☆29Updated 7 months ago
- Evolutionary conservation estimation of residues or nucleotides☆57Updated 3 years ago
- An ultra-high-performance protein-protein docking for heterogeneous supercomputers☆71Updated 2 years ago
- iLearnPlus is the first machine-learning platform with both graphical- and web-based user interface that enables the construction of auto…☆121Updated last year
- ColabFold protocol☆56Updated last year
- RNN-based Codon Optimization Tool. Publication: https://doi.org/10.1186/s12859-023-05246-8☆70Updated 2 years ago
- Physicochemical properties, indices and descriptors for amino-acid sequences.☆111Updated 4 months ago
- A software package for computing features of peptides and proteins☆65Updated last year