https://www.nature.com/articles/s41598-020-74091-z#Tab1
☆41Mar 13, 2024Updated last year
Alternatives and similar repositories for Codon_Optimization
Users that are interested in Codon_Optimization are comparing it to the libraries listed below
Sorting:
- RNN-based Codon Optimization Tool. Publication: https://doi.org/10.1186/s12859-023-05246-8☆70Apr 10, 2023Updated 2 years ago
- Use machine learning to design codon-optimized DNA sequences for increased protein expression.☆15Sep 27, 2022Updated 3 years ago
- A neural based approach to the task of genetic codon optimization☆18Aug 17, 2020Updated 5 years ago
- Simple Python program to perform codon optimization or heterology calculations.☆11Apr 13, 2021Updated 4 years ago
- ☆13Feb 20, 2022Updated 4 years ago
- TISIGNER: Unleash the power of synthetic biology☆29May 24, 2025Updated 9 months ago
- ☆15Jun 26, 2018Updated 7 years ago
- CodonTransformer (1M+ Downloads); The tool for codon optimization, optimizing DNA for protein expression☆197Jul 27, 2025Updated 7 months ago
- Protein language model trained on coding DNA☆53Oct 20, 2024Updated last year
- Python Implementation of Codon Adaption Index☆37Feb 1, 2023Updated 3 years ago
- A toolkit to bulk-submission, download, analysis and summarizing data from abYsis.org☆10Apr 20, 2020Updated 5 years ago
- ☆11Jan 2, 2021Updated 5 years ago
- Generating Protein Variants with Different Generative Models (HMM, VAE, ESM-2, ProtGPT2)☆11Mar 14, 2024Updated last year
- Sequence-based protein solubility prediction using multidimensional embedding☆12Apr 19, 2021Updated 4 years ago
- Python code and jupyter notebooks to accompany the manuscript "Deep learning models for lipid-nanoparticle-based drug delivery"☆13Jul 28, 2020Updated 5 years ago
- ☆11Oct 23, 2025Updated 4 months ago
- 🎈 Structure-aware adapter fine-tuning PLMs, with high training speed and impressive performance (Journal of Chemical Information and Mod…☆25May 16, 2025Updated 9 months ago
- ☆15Sep 29, 2025Updated 4 months ago
- Code of our JC paper: "Structure-aware protein solubility prediction from sequence through graph convolutional network and predicted cont…☆76Mar 1, 2022Updated 3 years ago
- Multi-Species Codon Optimization Engine☆27Jul 16, 2025Updated 7 months ago
- Cho codon optimization WIP☆13Oct 20, 2024Updated last year
- R package to BLAST peptide sequences against each other and identify the minimal overlap of aligning regions.☆16Aug 26, 2025Updated 6 months ago
- The official repository for TherML - a machine learning approach to predict scFv and antibody thermostability☆14Sep 8, 2023Updated 2 years ago
- Auto in silico Consensus Inverse Docking(ACID) is a web server mainly for drug repurposing based on the consensus inverse docking method…☆13Aug 22, 2019Updated 6 years ago
- ☆16Sep 15, 2025Updated 5 months ago
- Automated construction of protein chimeras and their analysis.☆14Sep 29, 2023Updated 2 years ago
- Expert-Guided Protein Language Models enable Accurate and Blazingly Fast Fitness Prediction☆17Feb 6, 2026Updated 3 weeks ago
- Predicting Nanobody Binding Epitopes Based on a Pretrained RoBERTa-based Model☆15Jun 4, 2024Updated last year
- ☆15Feb 18, 2026Updated last week
- DeepAAI☆35Dec 25, 2024Updated last year
- Official repository of EnzymeFlow☆98Dec 7, 2024Updated last year
- Codon optimizer for tissue-specific expression☆17Sep 26, 2024Updated last year
- Code for NeurIPS 2024 paper "A SARS-CoV-2 Interaction Dataset and VHH Sequence Corpus for Antibody Language Models"☆14Oct 17, 2024Updated last year
- Build an index for your BAM Index (BAI)☆17Apr 14, 2015Updated 10 years ago
- ☆18Jan 13, 2023Updated 3 years ago
- ☆19Nov 21, 2025Updated 3 months ago
- ☆16Feb 14, 2025Updated last year
- Robust and stable clustering of molecular dynamics simulation trajectories.☆19Sep 2, 2022Updated 3 years ago
- Customer workshop materials☆19May 11, 2023Updated 2 years ago