Devil625 / Codon_Optimization
https://www.nature.com/articles/s41598-020-74091-z#Tab1
☆38Updated 8 months ago
Related projects ⓘ
Alternatives and complementary repositories for Codon_Optimization
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆78Updated 8 months ago
- ☆46Updated 5 months ago
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆86Updated 2 months ago
- CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.☆33Updated 2 months ago
- Download pdb/protein structures using Uniprot id; This script will download related PDB files, extract chains(Optional), remove duplicate…☆38Updated 4 months ago
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆63Updated last year
- ☆17Updated 2 years ago
- python tools for TCR:peptide-MHC modeling and analysis☆66Updated 7 months ago
- Automatic oligonucleotide design for PCR-based gene synthesis☆37Updated 5 years ago
- scripts and facilities for in-silico mutagenesis with FoldX☆51Updated this week
- Multi-class signal peptide prediction and structure decoding model.☆83Updated 9 months ago
- ☆67Updated last year
- Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python☆28Updated last year
- Feature map and function annotation of Proteins☆30Updated 5 months ago
- A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions☆87Updated 2 months ago
- Code repository of "Deep generative design of RNA family sequences"☆28Updated 4 months ago
- ☆64Updated 2 months ago
- Neural networks for deep mutational scanning data☆66Updated last week
- The code for paper "Synthetic Promoter Design in Escherichia coli based on Deep Genera-tive Network"☆26Updated 5 years ago
- Multi-Species Codon Optimization Engine☆26Updated 11 months ago
- ☆29Updated 11 months ago
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆48Updated 4 months ago
- Mutation effects predicted from sequence co-variation☆61Updated 7 years ago
- ☆31Updated 2 years ago
- Protein language model trained on coding DNA☆38Updated last month
- Evolutionary conservation estimation of residues or nucleotides☆33Updated 2 years ago
- A domain parser for Alphafold models☆32Updated 11 months ago
- The code used to generate the results from Parkinson / Hard et al. 2022☆17Updated 2 weeks ago
- Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins☆110Updated last week
- PyMOL extension to color AlphaFold structures by confidence (pLDDT).☆73Updated 4 months ago