Alternatives and similar repositories for Codon_Optimization:

Users that are interested in Codon_Optimization are comparing it to the libraries listed below

• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆83Updated last year
• KULL-Centre / _2022_ML-ddG-Blaabjerg
  ☆49Updated 3 weeks ago
• weizhongli / cdhit-web-server
  ☆20Updated 2 years ago
• ml4bio / Dense-Homolog-Retrieval
  Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval
  ☆104Updated 7 months ago
• frankligy / DeepImmuno
  Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity
  ☆68Updated 2 years ago
• idrblab / AnnoPRO
  Feature map and function annotation of Proteins
  ☆33Updated 10 months ago
• davidhoover / DNAWorks
  Automatic oligonucleotide design for PCR-based gene synthesis
  ☆44Updated 5 years ago
• FPPGroup / CodonBERT
  CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.
  ☆35Updated 7 months ago
• Wang-Lin-boop / GetPDB
  Download pdb/protein structures using Uniprot id; This script will download related PDB files, extract chains(Optional), remove duplicate…
  ☆41Updated 9 months ago
• SNU-CSSB / RF2-Lite
  ☆26Updated 10 months ago
• ELELAB / mutatex
  scripts and facilities for in-silico mutagenesis with FoldX
  ☆56Updated 4 months ago
• steineggerlab / colabfold-protocol
  ColabFold protocol
  ☆50Updated 6 months ago
• tymor22 / tm-vec
  ☆66Updated 7 months ago
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆58Updated 4 years ago
• phbradley / TCRdock
  python tools for TCR:peptide-MHC modeling and analysis
  ☆74Updated last year
• HaochenW / Deep_promoter
  The code for paper "Synthetic Promoter Design in Escherichia coli based on Deep Genera-tive Network"
  ☆26Updated 5 years ago
• Abalign / Abalign
  A visualization software for antibody multi sequence alignment
  ☆18Updated 10 months ago
• xinyu-dev / annotate_v
  Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python
  ☆30Updated last year
• Wang-lab-UCSD / RESP
  The code used to generate the results from Parkinson / Hard et al. 2022
  ☆17Updated 5 months ago
• psipred / s4pred
  A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence
  ☆54Updated 3 weeks ago
• CongLabCode / DPAM
  A domain parser for Alphafold models
  ☆34Updated last year
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆84Updated 2 months ago
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆90Updated last year
• ntranoslab / esm-variants
  ☆73Updated last year
• JudeWells / chainsaw
  ☆38Updated 7 months ago
• realbigws / RaptorX_Property_Fast
  RaptorX-Property: a Standalone Package for Protein Structure Property Prediction
  ☆17Updated 5 years ago
• Rostlab / bindPredict
  Prediction of binding residues for metal ions, nucleic acids, and small molecules.
  ☆32Updated 4 months ago
• jcheongs / alphafold-multimer
  ☆29Updated 3 years ago
• prehensilecode / alphafold_singularity
  Singularity recipe for AlphaFold
  ☆35Updated 5 months ago
• MIDIfactory / AlphaFastPPi
  Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening
  ☆36Updated 6 months ago