RNN-based Codon Optimization Tool. Publication: https://doi.org/10.1186/s12859-023-05246-8
☆72Apr 10, 2023Updated 3 years ago
Alternatives and similar repositories for icor-codon-optimization
Users that are interested in icor-codon-optimization are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- https://www.nature.com/articles/s41598-020-74091-z#Tab1☆40Mar 13, 2024Updated 2 years ago
- Use machine learning to design codon-optimized DNA sequences for increased protein expression.☆17Sep 27, 2022Updated 4 years ago
- Multi-Species Codon Optimization Engine☆28Jul 16, 2025Updated last year
- A neural based approach to the task of genetic codon optimization☆19Aug 17, 2020Updated 6 years ago
- Simple Python program to perform codon optimization or heterology calculations.☆12Apr 13, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Cho codon optimization WIP☆14Oct 20, 2024Updated 2 years ago
- Codon usage tables in code-friendly format + Python bindings☆44May 9, 2025Updated last year
- Codon optimizer for tissue-specific expression☆17Sep 26, 2024Updated 2 years ago
- CodonTransformer (2M+ Downloads); The tool for codon optimization, optimizing DNA for protein expression☆228Jul 27, 2025Updated last year
- CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.☆44Sep 12, 2024Updated 2 years ago
- A versatile DNA sequence optimizer☆283Nov 5, 2025Updated 11 months ago
- Codon Optimizer for mRNA Vaccine Design☆29Sep 25, 2024Updated 2 years ago
- repository-based plasmid design☆32Nov 28, 2022Updated 3 years ago
- R package to BLAST peptide sequences against each other and identify the minimal overlap of aligning regions.☆17Aug 26, 2025Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- The LinearDesign mRNA design software.☆219Jun 4, 2024Updated 2 years ago
- Python Implementation of Codon Adaption Index☆38Feb 1, 2023Updated 3 years ago
- An amino acid sequence annotator☆17May 15, 2025Updated last year
- A toolkit to bulk-submission, download, analysis and summarizing data from abYsis.org☆10Apr 20, 2020Updated 6 years ago
- 🎈 Structure-aware adapter fine-tuning PLMs, with high training speed and impressive performance (Journal of Chemical Information and Mod…☆27May 16, 2025Updated last year
- A visualization software for antibody multi sequence alignment☆24Jun 15, 2024Updated 2 years ago
- ☆10Jan 15, 2025Updated last year
- Embeddings to Network Alignment - align biological networks between two species☆10Sep 8, 2023Updated 3 years ago
- The official repository for TherML - a machine learning approach to predict scFv and antibody thermostability☆16Sep 8, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- iCodon customizes gene expression based on the codon composition☆17Oct 28, 2023Updated 3 years ago
- A PCR primer tool for DNA assembly flows☆33Apr 24, 2024Updated 2 years ago
- BioLiP2 database curation and web interface☆36Jun 19, 2025Updated last year
- Protein language model trained on coding DNA☆56Oct 20, 2024Updated 2 years ago
- Contrastive learning of protein representations with graph neural networks for structural and functional annotations☆11Apr 23, 2023Updated 3 years ago
- ☆17Feb 14, 2025Updated last year
- test☆14Nov 13, 2020Updated 5 years ago
- ☆12Apr 21, 2026Updated 6 months ago
- Jaeger is a quick and precise tool for detecting viruses in sequence assemblies.☆10Oct 14, 2026Updated 2 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- This is a simple script to use [plip](https://github.com/pharmai/plip) to batch analysis of interactions between proteins and ligands tha…☆10Dec 23, 2020Updated 5 years ago
- a JavaScript DNA, RNA, and protein sequence viewer☆332Oct 13, 2026Updated 2 weeks ago
- Python package of codon usage bias analysis tools☆23May 16, 2026Updated 5 months ago
- Calculates pairwise sequence identity, similarity and normalized similarity score of proteins in a multiple sequence alignment.☆19Feb 15, 2026Updated 8 months ago
- Chorus: Heterogeneous GPU+CPU Multiple Protein Sequences Alignment Search for Large Database☆17Apr 7, 2025Updated last year
- VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.☆45Sep 8, 2026Updated last month
- Predicting the effect of mutations on protein stability and protein-protein interaction affinity.☆10Mar 29, 2021Updated 5 years ago