RNN-based Codon Optimization Tool. Publication: https://doi.org/10.1186/s12859-023-05246-8
☆70Apr 10, 2023Updated 3 years ago
Alternatives and similar repositories for icor-codon-optimization
Users that are interested in icor-codon-optimization are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- https://www.nature.com/articles/s41598-020-74091-z#Tab1☆41Mar 13, 2024Updated 2 years ago
- Use machine learning to design codon-optimized DNA sequences for increased protein expression.☆17Sep 27, 2022Updated 3 years ago
- Multi-Species Codon Optimization Engine☆28Jul 16, 2025Updated last year
- A neural based approach to the task of genetic codon optimization☆18Aug 17, 2020Updated 5 years ago
- Simple Python program to perform codon optimization or heterology calculations.☆12Apr 13, 2021Updated 5 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Codon optimizer for tissue-specific expression☆16Sep 26, 2024Updated last year
- CodonTransformer (2M+ Downloads); The tool for codon optimization, optimizing DNA for protein expression☆216Jul 27, 2025Updated 11 months ago
- Codon usage tables in code-friendly format + Python bindings☆43May 9, 2025Updated last year
- R package to BLAST peptide sequences against each other and identify the minimal overlap of aligning regions.☆17Aug 26, 2025Updated 10 months ago
- CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.☆43Sep 12, 2024Updated last year
- A versatile DNA sequence optimizer☆278Nov 5, 2025Updated 8 months ago
- Codon Optimizer for mRNA Vaccine Design☆27Sep 25, 2024Updated last year
- The official repository for TherML - a machine learning approach to predict scFv and antibody thermostability☆14Sep 8, 2023Updated 2 years ago
- Python Implementation of Codon Adaption Index☆37Feb 1, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A toolkit to bulk-submission, download, analysis and summarizing data from abYsis.org☆10Apr 20, 2020Updated 6 years ago
- 🎈 Structure-aware adapter fine-tuning PLMs, with high training speed and impressive performance (Journal of Chemical Information and Mod…☆27May 16, 2025Updated last year
- iCodon customizes gene expression based on the codon composition☆16Oct 28, 2023Updated 2 years ago
- An amino acid sequence annotator☆17May 15, 2025Updated last year
- repository-based plasmid design☆31Nov 28, 2022Updated 3 years ago
- Protein language model trained on coding DNA☆54Oct 20, 2024Updated last year
- nucleic acid folding☆109Jun 14, 2026Updated last month
- A PCR primer tool for DNA assembly flows☆33Apr 24, 2024Updated 2 years ago
- The LinearDesign mRNA design software.☆213Jun 4, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Python package of codon usage bias analysis tools☆21May 16, 2026Updated 2 months ago
- ☆12Jul 15, 2026Updated last week
- VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.☆44Mar 30, 2026Updated 3 months ago
- A visualization software for antibody multi sequence alignment☆23Jun 15, 2024Updated 2 years ago
- Protein interaction calculator☆15Feb 11, 2025Updated last year
- ☆22Jun 10, 2024Updated 2 years ago
- a JavaScript DNA, RNA, and protein sequence viewer☆325Updated this week
- ☆16Dec 17, 2025Updated 7 months ago
- ☆18Jan 13, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆20Nov 21, 2025Updated 8 months ago
- ☆26Apr 2, 2026Updated 3 months ago
- ☆14Dec 10, 2018Updated 7 years ago
- Detailed explanation on how to setup database for NCBI IgBlast executable, and using it in Python☆32Jun 8, 2022Updated 4 years ago
- This is an official implementation for "MMSite: A Multi-modal Framework for the Identification of Active Sites in Proteins".☆18Jan 4, 2025Updated last year
- The Patent and Literature Antibody Database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody s…☆13Sep 21, 2023Updated 2 years ago
- Code available for the quantitative pharmacophores☆13Sep 7, 2022Updated 3 years ago