RNN-based Codon Optimization Tool. Publication: https://doi.org/10.1186/s12859-023-05246-8
☆70Apr 10, 2023Updated 2 years ago
Alternatives and similar repositories for icor-codon-optimization
Users that are interested in icor-codon-optimization are comparing it to the libraries listed below
Sorting:
- Use machine learning to design codon-optimized DNA sequences for increased protein expression.☆15Sep 27, 2022Updated 3 years ago
- https://www.nature.com/articles/s41598-020-74091-z#Tab1☆41Mar 13, 2024Updated last year
- Multi-Species Codon Optimization Engine☆27Jul 16, 2025Updated 7 months ago
- Simple Python program to perform codon optimization or heterology calculations.☆11Apr 13, 2021Updated 4 years ago
- A neural based approach to the task of genetic codon optimization☆18Aug 17, 2020Updated 5 years ago
- R package to BLAST peptide sequences against each other and identify the minimal overlap of aligning regions.☆16Aug 26, 2025Updated 6 months ago
- Codon optimizer for tissue-specific expression☆17Sep 26, 2024Updated last year
- CodonTransformer (1M+ Downloads); The tool for codon optimization, optimizing DNA for protein expression☆197Jul 27, 2025Updated 7 months ago
- A PCR primer tool for DNA assembly flows☆33Apr 24, 2024Updated last year
- Python Implementation of Codon Adaption Index☆37Feb 1, 2023Updated 3 years ago
- CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.☆42Sep 12, 2024Updated last year
- The official repository for TherML - a machine learning approach to predict scFv and antibody thermostability☆14Sep 8, 2023Updated 2 years ago
- A versatile DNA sequence optimizer☆263Nov 5, 2025Updated 3 months ago
- 🎈 Structure-aware adapter fine-tuning PLMs, with high training speed and impressive performance (Journal of Chemical Information and Mod…☆25May 16, 2025Updated 9 months ago
- Codon usage tables in code-friendly format + Python bindings☆42May 9, 2025Updated 9 months ago
- nucleic acid folding☆110Aug 12, 2025Updated 6 months ago
- repository-based plasmid design☆31Nov 28, 2022Updated 3 years ago
- ☆18Jan 13, 2023Updated 3 years ago
- ☆19Nov 21, 2025Updated 3 months ago
- An amino acid sequence annotator☆17May 15, 2025Updated 9 months ago
- Protein language model trained on coding DNA☆53Oct 20, 2024Updated last year
- ☆20Jun 10, 2024Updated last year
- devCellPy is a Python package designed for hierarchical multilayered classification of cells based on single-cell RNA-sequencing.☆28Mar 4, 2024Updated last year
- The LinearDesign mRNA design software.☆203Jun 4, 2024Updated last year
- a JavaScript DNA, RNA, and protein sequence viewer☆303Updated this week
- 🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations☆37May 21, 2024Updated last year
- Codon Optimizer for mRNA Vaccine Design☆26Sep 25, 2024Updated last year
- SPACE: STRING proteins as complementary embeddings☆37Feb 18, 2026Updated last week
- A toolkit to bulk-submission, download, analysis and summarizing data from abYsis.org☆10Apr 20, 2020Updated 5 years ago
- VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.☆44Feb 22, 2026Updated last week
- ☆26Dec 2, 2025Updated 3 months ago
- KA-Search: Rapid and exhaustive sequence identity search of known antibodies☆23Jul 9, 2024Updated last year
- Chainer implementation of Graph Neural Networks for the Prediction of Substrate-Specific Organic Reaction Conditions☆10Apr 11, 2021Updated 4 years ago
- ☆15Apr 3, 2025Updated 10 months ago
- Virus Protein Structural Analysis Toolkit☆14Sep 9, 2024Updated last year
- DSResSol: A sequence-based solubility predictor created with Dilated Squeeze Excitation Residual Networks☆11May 30, 2024Updated last year
- ☆11Jan 2, 2021Updated 5 years ago
- ABIF parser, writer and generator☆11Dec 8, 2023Updated 2 years ago
- Useful functions for manipulating Multiplex Assay of Variant Effect datasets.☆10Feb 6, 2025Updated last year