Lattice-Automation / icor-codon-optimizationLinks
RNN-based Codon Optimization Tool. Publication: https://doi.org/10.1186/s12859-023-05246-8
☆70Updated 2 years ago
Alternatives and similar repositories for icor-codon-optimization
Users that are interested in icor-codon-optimization are comparing it to the libraries listed below
Sorting:
- https://www.nature.com/articles/s41598-020-74091-z#Tab1☆41Updated last year
- CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.☆41Updated last year
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆60Updated last month
- ☆99Updated 7 months ago
- Automatic oligonucleotide design for PCR-based gene synthesis☆51Updated 2 months ago
- ☆86Updated 2 years ago
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆75Updated 2 years ago
- python tools for TCR:peptide-MHC modeling and analysis☆88Updated last year
- Evolutionary conservation estimation of residues or nucleotides☆57Updated 3 years ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆90Updated last year
- Evolutionary velocity with protein language models☆95Updated 2 months ago
- Models, design algorithms, and other software related to Salis lab publications☆36Updated last year
- Multi-class signal peptide prediction and structure decoding model.☆102Updated last year
- Protein language model trained on coding DNA☆53Updated last year
- Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening☆39Updated last year
- Feature map and function annotation of Proteins☆34Updated last year
- CodonTransformer (1M+ Downloads); The tool for codon optimization, optimizing DNA for protein expression☆195Updated 6 months ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆60Updated 4 years ago
- scripts and facilities for in-silico mutagenesis with FoldX☆66Updated last month
- Multi-Species Codon Optimization Engine☆27Updated 6 months ago
- Fast protein structure searching or your money back☆118Updated 3 weeks ago
- Mutation effects predicted from sequence co-variation☆72Updated 8 years ago
- A PCR primer tool for DNA assembly flows☆33Updated last year
- MMseqs2 app to run on your workstation or servers☆105Updated this week
- Biological prediction models made simple.☆48Updated 3 weeks ago
- ☆95Updated last year
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆121Updated last year
- A tool for protein and protein complex structure prediction.☆29Updated 7 months ago
- Python package and command line tool for epitope prediction☆52Updated last year
- Singularity recipe for AlphaFold☆36Updated last year