Lattice-Automation / icor-codon-optimizationLinks
RNN-based Codon Optimization Tool. Publication: https://doi.org/10.1186/s12859-023-05246-8
☆69Updated 2 years ago
Alternatives and similar repositories for icor-codon-optimization
Users that are interested in icor-codon-optimization are comparing it to the libraries listed below
Sorting:
- https://www.nature.com/articles/s41598-020-74091-z#Tab1☆40Updated last year
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆56Updated last year
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆73Updated 2 years ago
- Evolutionary velocity with protein language models☆94Updated 2 years ago
- ☆91Updated last year
- Biological prediction models made simple.☆46Updated 3 weeks ago
- CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.☆41Updated last year
- Mutation effects predicted from sequence co-variation☆70Updated 8 years ago
- ☆96Updated 5 months ago
- Fast protein structure searching or your money back☆115Updated last month
- Feature map and function annotation of Proteins☆34Updated last year
- ☆82Updated 2 years ago
- Improving RNA structure prediction through multitask learning on diverse crowdsourced data.☆62Updated last year
- Evolutionary conservation estimation of residues or nucleotides☆52Updated 3 years ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆59Updated 4 years ago
- Multi-class signal peptide prediction and structure decoding model.☆97Updated 9 months ago
- Protein language model trained on coding DNA☆51Updated last year
- Automatic oligonucleotide design for PCR-based gene synthesis☆48Updated 6 years ago
- Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.☆34Updated 3 years ago
- scripts and facilities for in-silico mutagenesis with FoldX☆61Updated 4 months ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆90Updated last year
- Species-aware DNA language modeling☆18Updated 2 years ago
- ☆21Updated 3 years ago
- python tools for TCR:peptide-MHC modeling and analysis☆82Updated last year
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆31Updated 2 years ago
- A tool for protein and protein complex structure prediction.☆29Updated 5 months ago
- Official release of the ProGen models☆43Updated 9 months ago
- Code repository of "Deep generative design of RNA family sequences"☆38Updated last week
- Genomic language model predicts protein co-regulation and function☆84Updated 8 months ago
- De novo peptide sequencing with InstaNovo: Accurate, database-free peptide identification for large scale proteomics experiments☆103Updated last month