ALFA: Annotation Landscape for Aligned Reads
☆14Jun 30, 2020Updated 5 years ago
Alternatives and similar repositories for ALFA
Users that are interested in ALFA are comparing it to the libraries listed below
Sorting:
- Two pass alignment for long reads☆22Mar 9, 2021Updated 4 years ago
- Oxford Nanopore HDF/Fast5 to CRAM conversion tool☆22Dec 30, 2019Updated 6 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/DRIMSeq.html Bug Reports: https://support.bioconductor.org/p/new/post/…☆12Aug 5, 2020Updated 5 years ago
- Cluster informed Shigella and EIEC serotyping tool from Illumina reads and assemblies☆12Jun 30, 2023Updated 2 years ago
- Strip reads from Oxford Nanopore FAST5 files if they meet certain criteria☆14Jul 29, 2021Updated 4 years ago
- Nextflow workflow for automatic repeat detection, classification and masking☆13Feb 19, 2018Updated 8 years ago
- an open source data platform, developed in the Korcsmaros Group to store, analyze and integrate bioinformatics data☆12Feb 19, 2026Updated 2 weeks ago
- SARS-CoV-2 Deep Sequencing☆14Apr 22, 2020Updated 5 years ago
- ☆16May 22, 2023Updated 2 years ago
- Fast bird catching fishes AKA realtime very high accuracy CPU basecaller for Oxford nanopore reads.☆15Oct 6, 2021Updated 4 years ago
- High-performance regular expression matching library☆14Jan 28, 2021Updated 5 years ago
- Artisanal 🤣 bioinformatics tools and pipelines in Scala☆20Jan 28, 2020Updated 6 years ago
- Metagenomics calibration R package☆20Feb 15, 2022Updated 4 years ago
- URMAP ultra-fast read mapper☆38Jun 15, 2020Updated 5 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆35Dec 11, 2019Updated 6 years ago
- Transfer coordinates across genomes☆23Feb 17, 2026Updated 2 weeks ago
- A computational algorithm and software tool for fast and accurate detection of gene fusion by long-read transcriptome sequencing☆21Sep 19, 2021Updated 4 years ago
- DRUMMER: Detection of RNA modifications in nanopore direct RNA Sequencing datasets☆21Jul 8, 2022Updated 3 years ago
- Sequence Distance Graph framework: graph + reads + mapping + analysis☆25Jun 4, 2022Updated 3 years ago
- Scalable long read self-correction and assembly polishing with multiple sequence alignment☆54Feb 6, 2024Updated 2 years ago
- Fast5 API provided by ONT Research☆21Mar 17, 2022Updated 3 years ago
- Find Unique genomic Regions☆32Feb 25, 2026Updated last week
- Tool for demultiplexing Nanopore barcode sequence data☆25Dec 11, 2025Updated 2 months ago
- Integrated toolkit for analysis and evaluation of annotated genomes☆25Aug 1, 2025Updated 7 months ago
- V'DJer - B Cell Receptor Repertoire Reconstruction from short read mRNA-Seq data☆29Aug 9, 2022Updated 3 years ago
- Identification of segmental duplications in the genome☆27Mar 1, 2022Updated 4 years ago
- Demonstrating best practices for bioinformatics command line tools☆25Jul 23, 2020Updated 5 years ago
- Unfazed by genomic variant phasing☆27May 26, 2024Updated last year
- Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s).☆26Apr 5, 2024Updated last year
- HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies☆65Feb 23, 2020Updated 6 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆65Oct 11, 2024Updated last year
- De novo construction of isoforms from long-read data☆35Jun 10, 2025Updated 8 months ago
- fast webservices based query tool for large sets of genomic features☆25May 10, 2025Updated 9 months ago
- Snakemake workflow for bacterial genome assembly + polishing for Oxford Nanopore (ONT) sequencing using multiple tools.☆27Apr 23, 2024Updated last year
- Tools for merging Tandem Repeat VCF files☆37Apr 30, 2025Updated 10 months ago
- frame-shift correction for long-read (meta)genomics☆33Dec 11, 2023Updated 2 years ago
- De novo clustering of long transcript reads into genes☆70Apr 27, 2025Updated 10 months ago
- The Zavolab Automated RNA-seq Pipeline☆36Jan 29, 2026Updated last month
- Lint Nextflow pipelines in Python.☆11Jan 23, 2025Updated last year