basespace / basespace-python-sdk
BaseSpace Python SDK
☆37Updated 3 years ago
Alternatives and similar repositories for basespace-python-sdk:
Users that are interested in basespace-python-sdk are comparing it to the libraries listed below
- Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline☆57Updated 4 years ago
- Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integr…☆70Updated last month
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows☆41Updated last year
- Parse GFF3 into Pandas dataframes☆26Updated 10 months ago
- Mutation Identification Pipeline. Read the latest documentation:☆44Updated 10 months ago
- http://bam.iobio.io☆46Updated 7 months ago
- A web based tool to manage and automate the processing of publicly available datasets.☆40Updated 3 years ago
- ☆23Updated 6 years ago
- A needle plot for mutation data☆26Updated 7 years ago
- Bio-dockers: dockerized bioinformatic tools☆32Updated last week
- gnomAD browser pre-ASHG 2018☆33Updated 4 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated last year
- Example project for integrating igv.js and flask☆26Updated 4 months ago
- non-redundant, compressed, journalled, file-based storage for biological sequences☆40Updated this week
- Robust, tested workflows for RNA-seq, ChIP-seq and other high-throughput sequencing analysis☆20Updated this week
- NextSeq specific bcl2fastq2 wrapper.☆53Updated 3 years ago
- Reference-free duplex sequencing pipeline.☆18Updated 2 years ago
- an empirical Bayesian framework for mutation detection from cancer genome sequencing data☆31Updated 8 years ago
- A comprehensive cancer DNA/RNA analysis and reporting pipeline☆57Updated this week
- Gene Fusion Visualiser☆51Updated 2 years ago
- Tools for next-generation sequencing analysis☆88Updated 5 years ago
- Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; a…☆62Updated 2 months ago
- CWL implementation of CloudNeo: A cloud pipeline for identifying patient-specific tumor neoantigens☆19Updated 5 years ago
- Simple vcf parser, based on PyVCF☆46Updated 6 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆48Updated 5 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆79Updated 11 months ago
- UC Santa Cruz Computational Genomics Lab's Toil-based RNA-seq pipeline☆40Updated 4 years ago
- Transcript versions for HGVS libraries☆29Updated this week
- Deep Learning based variant calling toolkit - https://clara-parabricks.github.io/VariantWorks/☆45Updated 2 years ago