BaseSpace Python SDK
☆37Nov 17, 2021Updated 4 years ago
Alternatives and similar repositories for basespace-python-sdk
Users that are interested in basespace-python-sdk are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R tools to interact with hap.py output☆16Jul 12, 2019Updated 7 years ago
- vcf file manipulation☆22Jul 9, 2015Updated 11 years ago
- Variant quality checking scripts.☆12Feb 4, 2016Updated 10 years ago
- Abbreviate strings to short, unique identifiers☆24May 10, 2022Updated 4 years ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Apr 8, 2016Updated 10 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Docker containers that demonstrate a proof of concept bwa alignment workflow☆14Jan 13, 2015Updated 11 years ago
- Community-maintained list of resources that the CI4CC organization and the larger cancer informatics community have found useful or are d…☆22Sep 24, 2018Updated 7 years ago
- An algorithm for clonal tree reconstruction from multi-sample cancer sequencing data☆14Apr 1, 2018Updated 8 years ago
- ☆18Jul 9, 2018Updated 8 years ago
- GenoTypes Compressor☆16May 19, 2022Updated 4 years ago
- ☆11Jun 29, 2014Updated 12 years ago
- Isaac Genome Alignment Software☆36Apr 7, 2015Updated 11 years ago
- Build components for CloudMan, Galaxy on the Cloud, or Galaxy Server☆20Jun 27, 2017Updated 9 years ago
- A tiny package manager for crucial unix and bioinformatics tools☆27Apr 30, 2015Updated 11 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Python client for GA4GH htsget protocol☆15Nov 7, 2022Updated 3 years ago
- This project is deprecated, please see strelka2 at https://github.com/Illumina/strelka☆37Feb 24, 2017Updated 9 years ago
- The 3rd incarnation of the Wise package for sequence analysis☆23Jun 19, 2014Updated 12 years ago
- ☆12Feb 19, 2017Updated 9 years ago
- perform genotype-phenotype-association tests on a VCF with logistic regression.☆20Dec 15, 2015Updated 10 years ago
- Blacktie: a streamlined interface to the popular tophat/cufflinks RNA-seq pipeline☆27Oct 5, 2015Updated 10 years ago
- Haplotype-based somatic genome simulator☆10Apr 20, 2026Updated 3 months ago
- Fast Structural Variation Detection Toolbox☆19Feb 16, 2015Updated 11 years ago
- SevenBridges Python Api bindings☆46Apr 13, 2026Updated 3 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- CWL experimental grammar☆11Nov 16, 2025Updated 8 months ago
- ☆16Jan 2, 2024Updated 2 years ago
- ARCHIVED☆11May 10, 2022Updated 4 years ago
- [Legacy] Executor for CWL workflows. Executes sbg:draft-2 and CWL 1.0☆75Nov 18, 2020Updated 5 years ago
- Simulation tool for ChIP- and other -seq experiments☆14Mar 13, 2023Updated 3 years ago
- Genomics database manager☆25Mar 3, 2014Updated 12 years ago
- Alignment and variant-calling pipeline for Illumina HIV sequences.☆11May 19, 2020Updated 6 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Jun 28, 2018Updated 8 years ago
- Flexible genotype query among 30,000+ samples whole-genome☆95Sep 4, 2019Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- variant discovery and annotation using GATK and Ensembl☆17Jun 27, 2013Updated 13 years ago
- A tool for Read Multi-Mapper Resolution☆24Feb 15, 2017Updated 9 years ago
- Standalone C library for assembling Illumina short reads in small regions☆72Dec 15, 2022Updated 3 years ago
- A collection of cwl-ica workflows along with a user guide for the commands to use and contributions guide☆13May 5, 2026Updated 2 months ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Dec 10, 2024Updated last year
- Sequences from HIV Easily Reconstructed☆28May 3, 2024Updated 2 years ago
- extract SV signal from a BAM☆11Jul 26, 2018Updated 7 years ago