basespace / basespace-python-sdk
BaseSpace Python SDK
☆37Updated 3 years ago
Alternatives and similar repositories for basespace-python-sdk
Users that are interested in basespace-python-sdk are comparing it to the libraries listed below
Sorting:
- Parse Illumina sample sheets with Python☆50Updated last year
- Scalable RNA-seq analysis☆73Updated 4 years ago
- Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integr…☆69Updated last month
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows☆43Updated last year
- Testing building mulled containers for multi-requirement tools.☆72Updated this week
- hgvslib provides functions to parse and compare the equivalency of variant strings described according to Human Genome Variation Society …☆18Updated 2 years ago
- NextSeq specific bcl2fastq2 wrapper.☆53Updated 4 years ago
- Example project for integrating igv.js and flask☆26Updated 7 months ago
- Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; a…☆64Updated last month
- Malleable All-seeing Journal Of Research Artifacts☆36Updated last year
- Parse GFF3 into Pandas dataframes☆27Updated last year
- Tools for next-generation sequencing analysis☆88Updated 5 years ago
- Mutation Identification Pipeline. Read the latest documentation:☆44Updated last year
- Reference-free duplex sequencing pipeline.☆18Updated 2 years ago
- A Python library for reading and writing PacBio® data files☆39Updated 2 months ago
- Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline☆57Updated 5 years ago
- simple comparison of snakemake, nextflow and cromwell/wdl☆49Updated 4 years ago
- Library for manipulating genomic variants and predicting their effects☆84Updated 10 months ago
- Demonstrating best practices for bioinformatics command line tools☆26Updated 4 years ago
- Python bindings to bwa mem☆32Updated 5 years ago
- Bioinformatics workflows developed for and used on the St. Jude Cloud project.☆36Updated this week
- python access to UCSC genomes database☆135Updated 4 years ago
- Portable WDL workflows for IDseq production pipelines☆31Updated 3 years ago
- Pure-python implementation of UCSC liftOver genome coordinate conversion☆95Updated last year
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 5 months ago
- http://bam.iobio.io☆47Updated 11 months ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆50Updated 5 months ago
- Galaxy RNA workbench☆40Updated 4 years ago
- ☆82Updated 3 years ago
- Bio-dockers: dockerized bioinformatic tools☆32Updated 4 months ago