raytonghk / genepiper
GenePiper
☆12Updated 2 years ago
Alternatives and similar repositories for genepiper:
Users that are interested in genepiper are comparing it to the libraries listed below
- ☆32Updated 4 years ago
- Rank-based Gene Ontology analysis of gene expression data☆40Updated 2 years ago
- VirusSeeker is a set of fully automated and modular software package designed for mining sequence data to identify sequences of microbial…☆17Updated 7 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- Workflows for metagenomic sequence data processing and analysis.☆17Updated 5 years ago
- Set of utilities on sequences and BAM files☆26Updated 3 years ago
- ☆13Updated 7 years ago
- Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files☆20Updated last year
- These are scripts that I use frequently in genome annotation projects. Some of them have evolved awkwardly so the code is difficult to fo…☆15Updated 7 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 6 years ago
- Horizontal Gene Transfer Detection by Mapping Sequencing Reads☆21Updated 7 years ago
- A shiny package for microbiome functional enrichment analysis☆37Updated 3 months ago
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆16Updated 9 months ago
- Workflow for detecting genome-wide horizontal gene transfers☆10Updated 6 years ago
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆23Updated 6 years ago
- pGWAS and functional filtering pipeline to identify candidate adaptive genetic traits in bacteria☆11Updated 7 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- Whole-genome bioinformatic pipeline for pooled or individual-based NGS data using bash and R☆19Updated 2 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- ☆36Updated 2 years ago
- Long read metagenomics practical at EBAME18☆18Updated 6 years ago
- de.NBI Nanopore Training Course☆20Updated 2 years ago
- A (very) simple script to QC Hi-C data.☆25Updated 2 months ago
- A repository with scripts to run pipeline that are commonly used in the Meren Lab☆11Updated 7 years ago
- Genome-Genome circle synteny☆23Updated last year
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 2 years ago
- A set of R functions that help faciliate a lot of tedious processing☆18Updated 6 years ago
- A program for degenerate primer design for broad taxonomic-range PCR for microbial ecology studies☆30Updated last year