Alternatives and similar repositories for idepGolem

Users that are interested in idepGolem are comparing it to the libraries listed below

• crazyhottommy / compbio_tutorials
  My youtube programming scripts
  ☆59Updated last year
• saezlab / transcriptutorial
  This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL
  ☆56Updated 2 years ago
• Teichlab / cell2tcr
  Inference of TCR motifs
  ☆32Updated 7 months ago
• crazyhottommy / papers_with_data_to_mine
  published papers with a lot of data
  ☆74Updated 9 months ago
• crazyhottommy / compbio_resources_chatomics
  ☆27Updated 2 years ago
• PierreBSC / Viral-Track
  ☆62Updated 5 years ago
• OlgaVT / Alternative-Splicing-Tools
  A list of alternative splicing analysis resources
  ☆46Updated 9 months ago
• saezlab / cosmosR
  COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…
  ☆64Updated last month
• nf-core / scdownstream
  A single cell transcriptomics pipeline for QC, integration and making the data presentable
  ☆82Updated this week
• mdozmorov / MDnotes
  Links to all data science, genomics, and other notes
  ☆55Updated 2 weeks ago
• mhorlbeck / ScreenProcessing
  ☆68Updated 2 years ago
• tidyomics / tidyomics
  Easily install and load packages from the tidyomics ecosystem
  ☆74Updated 2 months ago
• ucdavis-bioinformatics-training / 2017_2018-single-cell-RNA-sequencing-Workshop-UCD_UCB_UCSF
  2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF
  ☆36Updated 7 years ago
• dakwok / SSNIP
  The Spatial Splicing-derived Neoantigen Identifier Pipeline (SSNIP) allows for the precise characterization of neoantigens derived from c…
  ☆20Updated 9 months ago
• GangLiLab / genekitr
  🧬 Gene analysis toolkit based on R
  ☆61Updated last year
• reimandlab / ActivePathways
  Integrative pathway enrichment analysis of multivariate omics data
  ☆118Updated 6 months ago
• WCSCourses / SingleCell_23
  Hands-on training on the latest methodologies and applications for the analysis of nucleic acids from eukaryotic single cells
  ☆17Updated last year
• bartongroup / Proteus
  R package for analysing proteomics data
  ☆50Updated 2 years ago
• liulab-dfci / MAGeCK
  Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent gen…
  ☆34Updated 5 years ago
• nf-core / scflow
  Please consider using/contributing to https://github.com/nf-core/scdownstream
  ☆26Updated last year
• WubingZhang / MAGeCKFlute
  Integrative analysis pipeline for pooled CRISPR functional genetic screens
  ☆32Updated 2 years ago
• almeidasilvaf / BioNERO
  Easy and comprehensive biological network reconstruction and analysis
  ☆34Updated 4 months ago
• hukai916 / scATACpipe
  ☆27Updated last year
• uc-bd2k / GREIN
  GREIN : GEO RNA-seq Experiments Interactive Navigator
  ☆50Updated 6 years ago
• ktrns / scrnaseq
  Workflow for single-cell RNA-seq analysis using Seurat
  ☆47Updated 2 years ago
• NBISweden / workshop-RNAseq
  Workshop • Analysis of RNA-seq data
  ☆37Updated last year
• mdozmorov / ChIP-seq_notes
  Notes on ChIP-seq and other-seq-related tools
  ☆26Updated 5 months ago
• sheynkman-lab / Long-Read-Proteogenomics
  A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.
  ☆50Updated 2 years ago
• reactome / ReactomeGSA
  R client for the REACTOME Analysis Service for comparative multi-omics gene set analysis
  ☆30Updated last year
• sandberg-lab / Smart-seq3
  Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).
  ☆56Updated 4 years ago