𧬠Gene analysis toolkit based on R
β62Jan 6, 2025Updated last year
Alternatives and similar repositories for genekitr
Users that are interested in genekitr are comparing it to the libraries listed below
Sorting:
- Scripts from the GBM cellular states paperβ20Feb 24, 2021Updated 5 years ago
- Mabs, a genome assembly tool that optimizes parameters of Hifiasm and Flyeβ35Mar 5, 2026Updated 2 weeks ago
- This pipeline is used to distinguish allotetraploid subgenomes.β11Apr 8, 2024Updated last year
- An R package to calculate Dynamical Network Biomarkers (DNB).β10Sep 16, 2022Updated 3 years ago
- β18Feb 18, 2021Updated 5 years ago
- β23Mar 12, 2026Updated last week
- Gene orthologs for model organisms in a tidy data formatβ14Sep 29, 2022Updated 3 years ago
- genome annotation (RNAseq and TE) pipeline (draft)β13Aug 26, 2025Updated 6 months ago
- ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-orthβ¦β22Jan 21, 2026Updated last month
- β20Jul 14, 2022Updated 3 years ago
- β21Mar 4, 2024Updated 2 years ago
- scRNA analysis of public dataset on bladder cancerβ19Dec 12, 2025Updated 3 months ago
- GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Toolsβ39Feb 26, 2026Updated 3 weeks ago
- DNAscan2 is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring vβ¦β14May 7, 2024Updated last year
- BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scaleβ57Aug 6, 2023Updated 2 years ago
- R package to do enrichment analysis for neoantigensβ13Feb 21, 2022Updated 4 years ago
- β17Feb 3, 2020Updated 6 years ago
- IAN: An Intelligent System for Omics Data Analysis and Discoveryβ10Feb 23, 2026Updated 3 weeks ago
- Chromosome-level synteny plotting using orthologous regionsβ32Sep 19, 2024Updated last year
- Download FASTQ files from SRA or ENA repositories.β376Feb 1, 2026Updated last month
- β10Aug 21, 2025Updated 6 months ago
- PathIntegrate Python package for pathway-based multi-omics data integrationβ18Nov 9, 2024Updated last year
- Ratio of the interferon-Ξ³ signature to the immunosuppression signature predicts anti-PD-1 therapy response in melanomaβ13Jun 4, 2023Updated 2 years ago
- SCORPiOs is a synteny-guided gene tree correction pipeline for clades that have undergone a whole-genome duplication event.β24Sep 23, 2024Updated last year
- PyComplexHeatmap: A Python package to plot complex heatmap (clustermap)β374Mar 13, 2026Updated last week
- Separating the direct effects of risk factors for atherosclerotic cardiovascular disease from those mediated by type 2 diabetesβ18Mar 12, 2023Updated 3 years ago
- GWAS genetics Fine-mapping methodβ17May 17, 2024Updated last year
- Strand and WGD aware syntenic gene identificationβ15Oct 16, 2025Updated 5 months ago
- The repository serves as a public and official hosting of the pSONIC program (Conover et al., 2021).β21Sep 9, 2021Updated 4 years ago
- A tool for projecting genomic alignments to transcriptomic coordinatesβ37May 28, 2024Updated last year
- A comparative genomics workflow using Nextflow, conda, Julia and Rβ49Apr 24, 2024Updated last year
- My Self-Study Room: keep tidy and lightweightβ30Apr 25, 2024Updated last year
- β45Oct 29, 2022Updated 3 years ago
- β13Dec 15, 2021Updated 4 years ago
- β14Feb 9, 2026Updated last month
- Code to go along with a manuscript: Bunis, et. al., Cell Reports, 2021.β12May 3, 2023Updated 2 years ago
- R code in workflow of chip-seq analysisβ11Nov 20, 2019Updated 6 years ago
- This repostory contains codes for Shimada et al., "A tool for browsing the Cancer Dependency Map reveals functional connections between gβ¦β13Sep 3, 2021Updated 4 years ago
- R tools for analysis and visualization of single-cell subclustering dataβ18Sep 9, 2025Updated 6 months ago