GangLiLab / genekitr
๐งฌ Gene analysis toolkit based on R
โ55Updated last month
Alternatives and similar repositories for genekitr:
Users that are interested in genekitr are comparing it to the libraries listed below
- workshop website on readthedocsโ19Updated 2 months ago
- โ26Updated last year
- Workshop โข Analysis of RNA-seq dataโ35Updated 11 months ago
- From RNA-seq raw reads to enriched pathways by DEGsโ32Updated 9 months ago
- โ36Updated 2 years ago
- This package provides a function to reformat lists of genome coverage files, such as bigWig of bam files, into the directory structure ofโฆโ28Updated 9 months ago
- Enrichment Networks for Pathway Enrichment Analysisโ42Updated last year
- Identify and correct invalid gene symbolsโ59Updated 3 months ago
- Bayesian network plot for the enrichment analysis resultsโ62Updated 4 months ago
- scDataviz: single cell dataviz and downstream analysesโ63Updated 3 years ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSFโ35Updated 6 years ago
- Easy and comprehensive biological network reconstruction and analysisโ27Updated 4 months ago
- binned motif enrichment analysis and visualisationโ40Updated 2 weeks ago
- โ10Updated 7 months ago
- documentation for trackViewerโ29Updated 5 years ago
- Time-Course Multi-Omics data integrationโ24Updated 10 months ago
- UniverSC: a flexible cross-platform single-cell data processing pipelineโ45Updated 11 months ago
- An R for fast and flexible DNA methylation analysisโ31Updated 6 months ago
- A snakemake pipeline for 10X genomics cellrangerโ20Updated last month
- An R interface to the MEME Suiteโ49Updated 4 months ago
- R package wrapping bedtoolsโ38Updated 5 months ago
- A pipeline to identify pathogenic microorganisms from scRNA-seq raw data.โ27Updated last year
- GREAT Analysis - Functional Enrichment on Genomic Regionsโ86Updated 6 months ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVALโ55Updated last year
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signifโฆโ35Updated last year
- ๐ง Visualizing Single Cell and Spatial Transcriptomicsโ47Updated 3 months ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.โ56Updated 11 months ago
- Tutorial for AMSI BioInfoSummer 2018โ29Updated 6 years ago
- A single cell RNA-seq reference map of human hematopoietic development in the bone marrow, with balanced representation of hematopoietic โฆโ33Updated 3 months ago
- R code in workflow of chip-seq analysisโ11Updated 5 years ago