Alternatives and similar repositories for genekitr

Users that are interested in genekitr are comparing it to the libraries listed below

• noriakis / CBNplot
  Bayesian network plot for the enrichment analysis results
  ☆65Updated 10 months ago
• snystrom / memes
  An R interface to the MEME Suite
  ☆52Updated 2 months ago
• benben-miao / TOmicsVis
  Transcriptomics Visualization R package.
  ☆72Updated 4 months ago
• bjmt / universalmotif
  Motif manipulation functions for R.
  ☆30Updated 4 months ago
• NBISweden / workshop-RNAseq
  Workshop • Analysis of RNA-seq data
  ☆36Updated last year
• andymckenzie / DGCA
  Differential Gene Correlation Analysis
  ☆45Updated last year
• dakwok / SSNIP
  The Spatial Splicing-derived Neoantigen Identifier Pipeline (SSNIP) allows for the precise characterization of neoantigens derived from c…
  ☆19Updated 4 months ago
• jeffsocal / tidyproteomics
  An S3 data object and framework for common quantitative proteomic analyses
  ☆44Updated 2 months ago
• jokergoo / simplifyEnrichment
  Simplify functional enrichment results
  ☆117Updated 11 months ago
• jokergoo / rGREAT
  GREAT Analysis - Functional Enrichment on Genomic Regions
  ☆90Updated 5 months ago
• fpbarthel / GLASS
  GLASS consortium
  ☆40Updated 5 years ago
• YosefLab / ImpulseDE2
  ☆38Updated 2 years ago
• saezlab / transcriptutorial
  This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL
  ☆56Updated 2 years ago
• jianhong / trackViewer.documentation
  documentation for trackViewer
  ☆29Updated 6 years ago
• ncrna / PathogenTrack
  A pipeline to identify pathogenic microorganisms from scRNA-seq raw data.
  ☆28Updated last year
• songw01 / MEGENA
  Multiscale embedded gene co-expression network analysis
  ☆54Updated last year
• NKI-GCF / XenofilteR
  Filtering of PDX samples for mouse derived reads
  ☆28Updated 2 years ago
• tidyomics / tidyomics
  Easily install and load packages from the tidyomcis ecosystem
  ☆68Updated last year
• hamidghaedi / Enrichment-Analysis
  From RNA-seq raw reads to enriched pathways by DEGs
  ☆32Updated last year
• almeidasilvaf / BioNERO
  Easy and comprehensive biological network reconstruction and analysis
  ☆31Updated 10 months ago
• MD-Anderson-Bioinformatics / BatchEffectsPackage
  The MBatch R package and Docker image are designed to help assess and correct for batch effects.
  ☆17Updated last year
• PhanstielLab / bedtoolsr
  R package wrapping bedtools
  ☆42Updated 5 months ago
• jianhong / trackViewer
  A bioconductor package with minimalist design for drawing elegant tracks or lollipop plot
  ☆73Updated 2 months ago
• reimandlab / ActivePathways
  Integrative pathway enrichment analysis of multivariate omics data
  ☆114Updated last month
• yezhengSTAT / CUTTag_tutorial
  Tutorial Website
  ☆59Updated 4 years ago
• waldronlab / HGNChelper
  Identify and correct invalid gene symbols
  ☆59Updated 9 months ago
• junjunlab / tackPlotR
  An R package to visualize bigwigs.
  ☆31Updated 3 years ago
• ucdavis-bioinformatics-training / 2017_2018-single-cell-RNA-sequencing-Workshop-UCD_UCB_UCSF
  2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF
  ☆36Updated 7 years ago
• ELTEbioinformatics / mulea
  mulea - an R package for enrichment analysis using various ontologies and empirical false discovery rate
  ☆29Updated last month
• julienroyulaval / DESeq2-MultiBatch
  Batch Correction and Adaptive Contrast Calling in Complex RNA-seq Experimental Designs Using DESeq2
  ☆16Updated 3 months ago