GangLiLab / genekitr
๐งฌ Gene analysis toolkit based on R
โ55Updated 3 weeks ago
Alternatives and similar repositories for genekitr:
Users that are interested in genekitr are comparing it to the libraries listed below
- Workshop โข Analysis of RNA-seq dataโ34Updated 10 months ago
- โ26Updated last year
- A snakemake pipeline for 10X genomics cellrangerโ19Updated last month
- workshop website on readthedocsโ19Updated last month
- Identify and correct invalid gene symbolsโ57Updated 2 months ago
- From RNA-seq raw reads to enriched pathways by DEGsโ32Updated 9 months ago
- An R interface to the MEME Suiteโ47Updated 3 months ago
- Bayesian network plot for the enrichment analysis resultsโ62Updated 3 months ago
- scDataviz: single cell dataviz and downstream analysesโ63Updated 3 years ago
- โ46Updated 3 weeks ago
- Easy and comprehensive biological network reconstruction and analysisโ26Updated 3 months ago
- ๐ง Visualizing Single Cell and Spatial Transcriptomicsโ47Updated 3 months ago
- Reference transcriptome indices build from kallisto for popular organismsโ41Updated last year
- โ26Updated 3 months ago
- This package provides a function to reformat lists of genome coverage files, such as bigWig of bam files, into the directory structure ofโฆโ28Updated 9 months ago
- A single cell RNA-seq reference map of human hematopoietic development in the bone marrow, with balanced representation of hematopoietic โฆโ31Updated 2 months ago
- A pipeline to identify pathogenic microorganisms from scRNA-seq raw data.โ27Updated last year
- โ14Updated 2 years ago
- UniverSC: a flexible cross-platform single-cell data processing pipelineโ45Updated 11 months ago
- โ32Updated last year
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVALโ55Updated last year
- R/Bioconductor package for working with 10x scATACseq dataโ38Updated last year
- Transcriptomics Visualization R package.โ68Updated last year
- โ36Updated 2 years ago
- An R package to analyze single-cell V(D)J dataโ24Updated last year
- Mixed-effect model to test differences in cell type proportions from single-cell dataโ97Updated this week
- documentation for trackViewerโ29Updated 5 years ago
- The MBatch R package and Docker image are designed to help assess and correct for batch effects.โ16Updated 7 months ago
- โ20Updated 2 years ago
- Interactive R package to quantify, analyse and visualise alternative splicingโ36Updated 3 weeks ago