kevinkovalchik / RawToolsLinks
RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control analysis of Thermo Orbitrap raw mass spectrometer files from data-dependent acquisition experiments.
☆65Updated 2 years ago
Alternatives and similar repositories for RawTools
Users that are interested in RawTools are comparing it to the libraries listed below
Sorting:
- Fast and flexible semi-supervised learning for peptide detection in Python☆48Updated 8 months ago
- The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆96Updated last month
- Instrument Application Programming Interface☆51Updated 3 weeks ago
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆48Updated this week
- Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono☆226Updated this week
- ☆42Updated 7 months ago
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆86Updated 2 months ago
- Thermo MSFileReader Python bindings☆69Updated 4 years ago
- DeepLC: Retention time prediction for (modified) peptides using Deep Learning.☆70Updated last month
- The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code☆24Updated 3 weeks ago
- Democratizing ML in proteomics☆43Updated 2 months ago
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆90Updated 2 months ago
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆121Updated 3 months ago
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆54Updated this week
- ☆13Updated last year
- Rescoring and spectral library generation pipeline for proteomics.☆49Updated last week
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆31Updated last week
- Open-source C++ and Python module for opening binary timsTOF data files.☆49Updated 4 months ago
- Python package for investigating the structural context of PTMs☆28Updated 9 months ago
- This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C. This project aims to…☆27Updated 11 months ago
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆60Updated 2 months ago
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆47Updated 7 months ago
- ☆20Updated 8 months ago
- ☆22Updated 4 years ago
- modular & open DIA search☆80Updated this week
- ☆63Updated 7 months ago
- Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities☆102Updated this week
- Deep learning framework for proteomics☆132Updated last month
- asari, metabolomics data preprocessing☆54Updated this week
- ☆28Updated 5 months ago