RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control analysis of Thermo Orbitrap raw mass spectrometer files from data-dependent acquisition experiments.
☆68Jan 6, 2026Updated 2 months ago
Alternatives and similar repositories for RawTools
Users that are interested in RawTools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Access Orbitrap data in R lang using C# .NET assembly - bioconductor package☆61Feb 10, 2026Updated last month
- RawQuant is a Python package for extracting scan meta data and quantification values from Thermo .raw files.☆11Jan 4, 2019Updated 7 years ago
- Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono☆241Mar 7, 2026Updated 2 weeks ago
- .NET DLL wrapper for reading Thermo .Raw files. Uses ThermoFisher.CommonCore NuGet packages provided by Thermo Fisher Scientific☆40Jul 10, 2025Updated 8 months ago
- ☆67Mar 17, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code☆26Oct 2, 2025Updated 5 months ago
- Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics☆11Jun 3, 2025Updated 9 months ago
- AutoRT: Peptide retention time prediction using deep learning☆30Jul 31, 2024Updated last year
- MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring☆21Updated this week
- Instrument Application Programming Interface☆53Sep 29, 2025Updated 5 months ago
- Thermo MSFileReader Python bindings☆69May 4, 2021Updated 4 years ago
- Top down / bottom up, MS/MS analysis tool for DDA and DIA mass spectrometry data☆31Oct 5, 2022Updated 3 years ago
- Brings Orbitrap mass spectrometry data to life; multi-platform, fast and colorful R package☆37May 1, 2024Updated last year
- An open-source Python package to unify raw MS data accession and storage.☆31Mar 18, 2026Updated last week
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- pDeepXL: MS/MS spectrum prediction for cross-linked peptide pairs by deep learning☆12Feb 8, 2021Updated 5 years ago
- Repository for mzIdentML and the corresponding examples☆26Jan 16, 2026Updated 2 months ago
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆128Jan 13, 2026Updated 2 months ago
- DIA-NN - a universal automated software suite for DIA proteomics data analysis.☆431Feb 5, 2026Updated last month
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆50Feb 10, 2026Updated last month
- A python package for fast post translational modification localization, powered by Cython.☆20Dec 15, 2023Updated 2 years ago
- Library for mass spectrometry projects☆27Mar 6, 2026Updated 2 weeks ago
- C# Mass Spectrometry Library☆40Jun 14, 2022Updated 3 years ago
- A cross-platform proteomics data analysis suite☆282Mar 17, 2026Updated last week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Mass Spectrometry Tool☆25Jun 12, 2024Updated last year
- ☆16Oct 3, 2023Updated 2 years ago
- Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics☆23Jul 25, 2025Updated 8 months ago
- A modest Feature Finder (moFF) to extract MS1 intensities from Thermo raw file☆33Apr 19, 2021Updated 4 years ago
- Proteome Generator☆10Apr 18, 2019Updated 6 years ago
- Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful fo…☆92Aug 17, 2023Updated 2 years ago
- ☆24Feb 26, 2023Updated 3 years ago
- Low level infrastructure to handle MS spectra☆44Mar 16, 2026Updated last week
- Confidence Estimation for Mass Spectrometry Proteomics☆14May 28, 2025Updated 9 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering☆125Feb 12, 2026Updated last month
- A tool integrates channel abundances from multiple TMT samples and exports a general report for downstream analysis.☆13Mar 11, 2026Updated 2 weeks ago
- ☆14Feb 11, 2020Updated 6 years ago
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆33Updated this week
- Proteomics search & quantification so fast that it feels like magic☆278Mar 17, 2026Updated last week
- Automatically exported from code.google.com/p/kojak-ms☆13Apr 11, 2025Updated 11 months ago
- Convert ThermoFinningan RAW mass spectrometry files to the mzXML format☆17Nov 8, 2023Updated 2 years ago