kevinkovalchik / RawToolsLinks
RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control analysis of Thermo Orbitrap raw mass spectrometer files from data-dependent acquisition experiments.
☆65Updated 2 years ago
Alternatives and similar repositories for RawTools
Users that are interested in RawTools are comparing it to the libraries listed below
Sorting:
- The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆98Updated last month
- Fast and flexible semi-supervised learning for peptide detection in Python☆48Updated 8 months ago
- Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono☆228Updated 3 weeks ago
- Instrument Application Programming Interface☆51Updated last month
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆49Updated this week
- Thermo MSFileReader Python bindings☆69Updated 4 years ago
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆122Updated 4 months ago
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆86Updated 2 months ago
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆54Updated last week
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆31Updated last month
- DeepLC: Retention time prediction for (modified) peptides using Deep Learning.☆70Updated last month
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆91Updated 2 weeks ago
- The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code☆24Updated last month
- Open-source C++ and Python module for opening binary timsTOF data files.☆49Updated 5 months ago
- This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C. This project aims to…☆30Updated 11 months ago
- Democratizing ML in proteomics☆44Updated last week
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆47Updated 8 months ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆64Updated 2 weeks ago
- ☆13Updated last year
- HUPO-PSI mass spectrometry CV☆37Updated last week
- A python package for fast post translational modification localization, powered by Cython.☆20Updated last year
- Rescoring and spectral library generation pipeline for proteomics.☆52Updated 3 weeks ago
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆81Updated 3 weeks ago
- modular & open DIA search☆88Updated this week
- Deep learning framework for proteomics☆132Updated 2 months ago
- ☆43Updated 8 months ago
- Python Package for the downstream analysis of mass-spectrometry-based proteomics data☆76Updated last week
- asari, metabolomics data preprocessing☆55Updated 3 weeks ago
- Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics☆22Updated 3 months ago
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆60Updated 2 months ago