Alternatives and similar repositories for JAABA

Users that are interested in JAABA are comparing it to the libraries listed below

• gordonberman / MotionMapper
  Sample implementation of the MotionMapper behavioral analysis algorithms
  ☆81Updated 5 years ago
• SchwarzNeuroconLab / DeepLabStream
  Closed-loop behavioral experiment toolkit using pose estimation of body parts.
  ☆61Updated 2 years ago
• denisecailab / minian
  miniscope analysis pipeline with interactive visualizations
  ☆97Updated last year
• denisecailab / ezTrack
  Free, platform independent, behavior tracking software.
  ☆143Updated 6 months ago
• DeNardoLab / BehaviorDEPOT
  Repository for BehaviorDEPOT pipeline app files and source code
  ☆38Updated last year
• zivlab / CellReg
  Registration of cells across sessions.
  ☆75Updated last year
• cortex-lab / allenCCF
  Tools to work with Allen Inst CCF data in matlab
  ☆143Updated 5 months ago
• bonsai-rx / deeplabcut
  A Bonsai interface for real-time markerless pose estimation using DeepLabCut
  ☆53Updated 7 months ago
• billkarsh / SpikeGLX
  SpikeGLX recording system GUI [Neuropixels NI]
  ☆100Updated this week
• neuroethology / bentoMAT
  A gui for browsing joint calcium imaging + behavioral data.
  ☆54Updated 11 months ago
• ETHZ-INS / DLCAnalyzer
  R Scripts to analyze deep lab cut point data and related data
  ☆70Updated 2 years ago
• petersaj / neuropixels_trajectory_explorer
  Neuropixels trajectory explorer with the Allen CCF mouse atlas
  ☆79Updated 8 months ago
• DeepLabCut / DLCutils
  Various scripts to support deeplabcut and what to do afterwards!
  ☆158Updated 6 months ago
• SjulsonLab / methods_class
  "Approaches to Study Neural Circuits" course
  ☆65Updated last year
• HelmchenLabSoftware / Cascade
  Calibrated inference of spiking from calcium ΔF/F data using deep networks
  ☆156Updated last month
• jessedmarshall / CAPTURE_demo
  Demo code for CAPTURE and DANNCE
  ☆29Updated 4 years ago
• djamesbarker / pMAT
  Fiber Photometry Modular Analysis Tool Suite
  ☆42Updated 4 years ago
• Whitlock-Group / HERBS
  ☆52Updated last year
• petersaj / AP_histology
  Histology processing
  ☆71Updated last week
• RichieHakim / ROICaT
  Region Of Interest Classification and Tracking
  ☆27Updated last week
• portugueslab / stytra
  A modular package to control stimulation and track behaviour
  ☆47Updated last year
• kushalkolar / MESmerize
  Platform for Calcium Imaging analysis. DEPRECATED.
  ☆62Updated 2 years ago
• VirtualBrainLab / Pinpoint
  Multi-probe trajectory planning in an intuitive 3D environment
  ☆56Updated this week
• bahanonu / ciatah
  CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…
  ☆99Updated last year
• murthylab / GLMHMM
  ☆24Updated 5 years ago
• petersenpeter / CellExplorer
  CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cell…
  ☆111Updated 2 months ago
• cortex-lab / Suite2P
  Tools for processing 2P recordings
  ☆130Updated 2 years ago
• ryhattori / PatchWarp
  Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.
  ☆26Updated 2 years ago
• YttriLab / B-SOID
  Behavioral segmentation of open field in DeepLabCut, or B-SOID ("B-side"), is a pipeline that pairs unsupervised pattern recognition with…
  ☆203Updated last year
• MouseLand / facemap
  Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…
  ☆181Updated 5 months ago