Alternatives and similar repositories for JAABA

Users that are interested in JAABA are comparing it to the libraries listed below

• gordonberman / MotionMapper
  Sample implementation of the MotionMapper behavioral analysis algorithms
  ☆82Updated 5 years ago
• SchwarzNeuroconLab / DeepLabStream
  Closed-loop behavioral experiment toolkit using pose estimation of body parts.
  ☆62Updated 2 years ago
• denisecailab / ezTrack
  Free, platform independent, behavior tracking software.
  ☆143Updated 7 months ago
• DeNardoLab / BehaviorDEPOT
  Repository for BehaviorDEPOT pipeline app files and source code
  ☆39Updated 3 weeks ago
• denisecailab / minian
  miniscope analysis pipeline with interactive visualizations
  ☆98Updated last year
• zivlab / CellReg
  Registration of cells across sessions.
  ☆75Updated last year
• cortex-lab / allenCCF
  Tools to work with Allen Inst CCF data in matlab
  ☆143Updated 6 months ago
• bonsai-rx / deeplabcut
  A Bonsai interface for real-time markerless pose estimation using DeepLabCut
  ☆53Updated 7 months ago
• MouseLand / facemap
  Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…
  ☆181Updated 6 months ago
• Whitlock-Group / HERBS
  ☆52Updated last year
• ETHZ-INS / DLCAnalyzer
  R Scripts to analyze deep lab cut point data and related data
  ☆71Updated 3 years ago
• neuroethology / bentoMAT
  A gui for browsing joint calcium imaging + behavioral data.
  ☆54Updated last year
• billkarsh / SpikeGLX
  SpikeGLX recording system GUI [Neuropixels NI]
  ☆101Updated this week
• cortex-lab / Suite2P
  Tools for processing 2P recordings
  ☆131Updated 2 years ago
• kushalkolar / MESmerize
  Platform for Calcium Imaging analysis. DEPRECATED.
  ☆62Updated 2 years ago
• SjulsonLab / methods_class
  "Approaches to Study Neural Circuits" course
  ☆65Updated last year
• petersaj / AP_histology
  Histology processing
  ☆72Updated last month
• petersaj / neuropixels_trajectory_explorer
  Neuropixels trajectory explorer with the Allen CCF mouse atlas
  ☆80Updated 9 months ago
• HelmchenLabSoftware / Cascade
  Calibrated inference of spiking from calcium ΔF/F data using deep networks
  ☆158Updated last week
• DeepLabCut / DLCutils
  Various scripts to support deeplabcut and what to do afterwards!
  ☆160Updated 6 months ago
• portugueslab / stytra
  A modular package to control stimulation and track behaviour
  ☆46Updated last year
• djamesbarker / pMAT
  Fiber Photometry Modular Analysis Tool Suite
  ☆42Updated 4 years ago
• m-beau / NeuroPyxels
  NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a…
  ☆139Updated last week
• ransona / ROIMatchPub
  Match suite2p ROIs between imaging sessions
  ☆28Updated 6 years ago
• JinghaoLu / MIN1PIPE
  A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.
  ☆65Updated last year
• petersenpeter / CellExplorer
  CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cell…
  ☆111Updated 3 months ago
• churchlandlab / ChronicNeuropixels
  Neuropixels case for chronic recordings in freely moving mice.
  ☆19Updated 6 years ago
• LernerLab / GuPPy
  Guided Photometry Analysis in Python, a free and open-source FP analysis tool.
  ☆82Updated this week
• jbohnslav / deepethogram
  ☆119Updated 5 months ago
• zhoupc / CNMF_E
  Constrained Nonnegative Matrix Factorization for microEndoscopic data
  ☆151Updated last year