kristinbranson / JAABA

Related projects ⓘ

Alternatives and complementary repositories for JAABA

• neuroethology / bentoMAT
  A gui for browsing joint calcium imaging + behavioral data.
  ☆50Updated 4 months ago
• petersaj / neuropixels_trajectory_explorer
  Neuropixels trajectory explorer with the Allen CCF mouse atlas
  ☆69Updated 2 months ago
• DeNardoLab / BehaviorDEPOT
  Repository for BehaviorDEPOT pipeline app files and source code
  ☆35Updated last month
• SchwarzNeuroconLab / DeepLabStream
  Closed-loop behavioral experiment toolkit using pose estimation of body parts.
  ☆52Updated last year
• djamesbarker / pMAT
  Fiber Photometry Modular Analysis Tool Suite
  ☆35Updated 3 years ago
• ETHZ-INS / DLCAnalyzer
  R Scripts to analyze deep lab cut point data and related data
  ☆61Updated last year
• Whitlock-Group / HERBS
  ☆51Updated 2 months ago
• int-brain-lab / iblapps
  pyqt5 dependent applications for IBL sessions
  ☆25Updated 2 weeks ago
• ThomasAkam / Point_Grey_Bonsai_multi_camera_acquisition
  Configurable acquisition from multiple FLIR/Point Grey camera using Bonsai and Python to h264 compress the video on the GPU.
  ☆13Updated last year
• gordonberman / MotionMapper
  Sample implementation of the MotionMapper behavioral analysis algorithms
  ☆77Updated 4 years ago
• cortex-lab / allenCCF
  Tools to work with Allen Inst CCF data in matlab
  ☆124Updated 8 months ago
• HelmchenLabSoftware / Cascade
  Calibrated inference of spiking from calcium ΔF/F data using deep networks
  ☆123Updated this week
• wildrootlab / SHARCQ
  Tools to register histological section images and cell count locations to mouse brain atlas
  ☆24Updated 2 years ago
• VirtualBrainLab / Pinpoint
  Multi-probe trajectory planning in an intuitive 3D environment
  ☆49Updated last month
• sanworks / Bpod_Gen2
  Repository for 2nd generation Bpod platform (formerly beta branch of Bpod repository)
  ☆31Updated 2 months ago
• denisecailab / minian
  miniscope analysis pipeline with interactive visualizations
  ☆91Updated 4 months ago
• zivlab / CellReg
  Registration of cells across sessions.
  ☆70Updated 3 months ago
• m-beau / NeuroPyxels
  NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a…
  ☆113Updated last month
• JaneliaSciComp / JRCLUST
  JRCLUST
  ☆34Updated 6 months ago
• billkarsh / SpikeGLX
  SpikeGLX recording system GUI [Neuropixels NI]
  ☆83Updated this week
• jessedmarshall / CAPTURE_demo
  Demo code for CAPTURE and DANNCE
  ☆27Updated 3 years ago
• ransona / ROIMatchPub
  Match suite2p ROIs between imaging sessions
  ☆23Updated 5 years ago
• schnitzer-lab / EXTRACT-public
  EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…
  ☆65Updated this week
• bermanlabemory / motionmapperpy
  Modified Python 3.0 implementation of MotionMapper (https://github.com/gordonberman/MotionMapper)
  ☆27Updated 5 months ago
• bahanonu / ciatah
  CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…
  ☆83Updated last week
• leomol / FPA
  Fiber photometry analysis
  ☆19Updated last month
• deisseroth-lab / multifiber
  A GUI and library for doing multi-fiber photometry
  ☆17Updated 7 years ago
• inscopix / inscopix-cnmfe
  Algorithm for automated source extraction from 1P data
  ☆19Updated last year
• djoshea / neuropixel-utils
  Utilities for managing Neuropixel datasets and Kilosort results
  ☆45Updated last year
• Julie-Fabre / awesome_neuropixels
  A curated list of awesome Neuropixels resources.
  ☆78Updated this week