YttriLab / B-SOIDLinks
Behavioral segmentation of open field in DeepLabCut, or B-SOID ("B-side"), is a pipeline that pairs unsupervised pattern recognition with supervised classification to achieve fast predictions of behaviors that are not predefined by users.
☆205Updated 2 years ago
Alternatives and similar repositories for B-SOID
Users that are interested in B-SOID are comparing it to the libraries listed below
Sorting:
- Variational Animal Motion Embedding - A tool for time series embedding and clustering☆199Updated last year
- a module for kinematic analysis of deeplabcut outputs☆151Updated 2 years ago
- Various scripts to support deeplabcut and what to do afterwards!☆161Updated 7 months ago
- R Scripts to analyze deep lab cut point data and related data☆71Updated 3 years ago
- ☆119Updated 5 months ago
- Closed-loop behavioral experiment toolkit using pose estimation of body parts.☆62Updated 2 years ago
- SimBA (Simple Behavioral Analysis), a pipeline and GUI for developing supervised behavioral classifiers☆348Updated this week
- ☆103Updated 3 months ago
- A Bonsai interface for real-time markerless pose estimation using DeepLabCut☆53Updated 8 months ago
- An active learning platform for expert-guided, data efficient discovery of behavior.☆66Updated 7 months ago
- A gui for browsing joint calcium imaging + behavioral data.☆55Updated last year
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆185Updated last week
- Modified Python 3.0 implementation of MotionMapper (https://github.com/gordonberman/MotionMapper)☆33Updated 7 months ago
- Free, platform independent, behavior tracking software.☆143Updated 7 months ago
- Repository for BehaviorDEPOT pipeline app files and source code☆41Updated last month
- AlphaTracker is a computer vision pipeline with the practical and real-time advantages , which requires minimal hardware requirements and…☆75Updated 2 years ago
- PyRat is a user friendly library in python to analyze data from the DeepLabCut. Developed to help researchers unfamiliar with programming…☆52Updated last year
- a Python API to record video & system timestamps from Imaging Source USB cameras☆69Updated 2 years ago
- Sample implementation of the MotionMapper behavioral analysis algorithms☆82Updated 5 years ago
- Demo code for CAPTURE and DANNCE☆29Updated 4 years ago
- Fiber Photometry Modular Analysis Tool Suite☆42Updated 4 years ago
- A tool for drawing ROIs on videos and analysing deeplabcut videos.☆35Updated 5 years ago
- Workshop material for using DeepLabCut☆147Updated 4 months ago
- DeepGraphPose☆32Updated 3 years ago
- End-user version of the Mouse Action Recognition System (MARS)☆77Updated last year
- Registration of cells across sessions.☆76Updated last year
- Toolbox for analyzing behavioral videos and neural activity☆61Updated 2 years ago
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆81Updated 9 months ago
- Quantify user-defined behaviors.☆103Updated 2 weeks ago
- Tools to work with Allen Inst CCF data in matlab☆145Updated 6 months ago