YttriLab / B-SOIDLinks
Behavioral segmentation of open field in DeepLabCut, or B-SOID ("B-side"), is a pipeline that pairs unsupervised pattern recognition with supervised classification to achieve fast predictions of behaviors that are not predefined by users.
☆202Updated last year
Alternatives and similar repositories for B-SOID
Users that are interested in B-SOID are comparing it to the libraries listed below
Sorting:
- Variational Animal Motion Embedding - A tool for time series embedding and clustering☆197Updated last year
- Various scripts to support deeplabcut and what to do afterwards!☆156Updated 5 months ago
- a module for kinematic analysis of deeplabcut outputs☆146Updated last year
- ☆115Updated 3 months ago
- R Scripts to analyze deep lab cut point data and related data☆70Updated 2 years ago
- ☆100Updated last month
- A gui for browsing joint calcium imaging + behavioral data.☆54Updated 10 months ago
- SimBA (Simple Behavioral Analysis), a pipeline and GUI for developing supervised behavioral classifiers☆345Updated this week
- A Bonsai interface for real-time markerless pose estimation using DeepLabCut☆52Updated 6 months ago
- Closed-loop behavioral experiment toolkit using pose estimation of body parts.☆61Updated 2 years ago
- An active learning platform for expert-guided, data efficient discovery of behavior.☆64Updated 5 months ago
- DeepGraphPose☆32Updated 3 years ago
- Modified Python 3.0 implementation of MotionMapper (https://github.com/gordonberman/MotionMapper)☆33Updated 5 months ago
- A tool for drawing ROIs on videos and analysing deeplabcut videos.☆35Updated 4 years ago
- Workshop material for using DeepLabCut☆145Updated 2 months ago
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆181Updated 4 months ago
- Code package that allows meta analyses of unsupervised behavior results☆19Updated 6 months ago
- Sample implementation of the MotionMapper behavioral analysis algorithms☆81Updated 5 years ago
- a Python API to record video & system timestamps from Imaging Source USB cameras☆67Updated 2 years ago
- End-user version of the Mouse Action Recognition System (MARS)☆77Updated last year
- quantification of behavior across chronic social defeat stress☆11Updated 3 years ago
- Quantify user-defined behaviors.☆101Updated 2 weeks ago
- ☆241Updated 7 months ago
- DeepLabCut based data analysis package including pose estimation and representation learning mediated behavior recognition☆51Updated this week
- Variational Animal Motion Embedding - A tool for time series embedding and clustering☆37Updated 2 months ago
- Demo code for CAPTURE and DANNCE☆29Updated 4 years ago
- PyRat is a user friendly library in python to analyze data from the DeepLabCut. Developed to help researchers unfamiliar with programming…☆52Updated last year
- We turn natural language descriptions of behaviors into machine-executable code☆231Updated 5 months ago
- Free, platform independent, behavior tracking software.☆143Updated 5 months ago
- ☆19Updated 2 years ago