Alternatives and similar repositories for stytra

Users that are interested in stytra are comparing it to the libraries listed below

• SchwarzNeuroconLab / DeepLabStream
  Closed-loop behavioral experiment toolkit using pose estimation of body parts.
  ☆60Updated 2 years ago
• denisecailab / minian
  miniscope analysis pipeline with interactive visualizations
  ☆95Updated last year
• MouseLand / facemap
  Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…
  ☆178Updated 3 months ago
• int-brain-lab / ibllib
  IBL core shared libraries
  ☆63Updated last week
• ransona / ROIMatchPub
  Match suite2p ROIs between imaging sessions
  ☆27Updated 6 years ago
• kushalkolar / MESmerize
  Platform for Calcium Imaging analysis. DEPRECATED.
  ☆62Updated last year
• petersenpeter / CellExplorer
  CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cell…
  ☆109Updated 3 weeks ago
• bonsai-rx / deeplabcut
  A Bonsai interface for real-time markerless pose estimation using DeepLabCut
  ☆52Updated 5 months ago
• int-brain-lab / mtscomp
  Multichannel time series lossless compression in pure Python based on NumPy and zlib
  ☆41Updated 7 months ago
• flatironinstitute / neurosift
  Browser-based NWB visualization and DANDI exploration
  ☆60Updated last week
• Whitlock-Group / HERBS
  ☆52Updated last year
• catalystneuro / neuroconv
  Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.
  ☆65Updated last week
• brainglobe / brainglobe-heatmap
  Rendering anatomical heatmaps with brainrender and matplotlib
  ☆44Updated 3 weeks ago
• SpikeInterface / spiketoolkit
  Python-based tools for pre-, post-processing, validating, and curating spike sorting datasets.
  ☆50Updated 3 years ago
• cunningham-lab / neurocaas
  IaC codebase for the NeuroCAAS Platform
  ☆38Updated last year
• HelmchenLabSoftware / Cascade
  Calibrated inference of spiking from calcium ΔF/F data using deep networks
  ☆152Updated 2 weeks ago
• LorenFrankLab / spyglass
  Neuroscience data analysis framework for reproducible research built by Loren Frank Lab at UCSF
  ☆104Updated this week
• schnitzer-lab / EXTRACT-public
  EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…
  ☆81Updated 10 months ago
• VirtualBrainLab / Pinpoint
  Multi-probe trajectory planning in an intuitive 3D environment
  ☆56Updated this week
• cortex-lab / Rigbox
  A MATLAB toolbox for running behavioral neuroscience experiments and managing data
  ☆32Updated last year
• RichieHakim / ROICaT
  Region Of Interest Classification and Tracking
  ☆26Updated last week
• cortex-lab / sortingQuality
  Functions to assess quality of spike sorting results
  ☆34Updated 2 years ago
• flatironinstitute / dendro-old
  Analyze neuroscience data in the cloud
  ☆18Updated last year
• losonczylab / sima
  Python package for analysis of dynamic fluorescence microscopy data
  ☆102Updated 6 years ago
• jessedmarshall / CAPTURE_demo
  Demo code for CAPTURE and DANNCE
  ☆29Updated 4 years ago
• paninski-lab / funimag
  Compression, denoising and demixing of functional imaging recordings
  ☆28Updated 7 years ago
• DeNardoLab / BehaviorDEPOT
  Repository for BehaviorDEPOT pipeline app files and source code
  ☆38Updated last year
• calebweinreb / SNUB
  ☆28Updated last week
• m-beau / NeuroPyxels
  NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a…
  ☆137Updated 4 months ago
• bahanonu / ciatah
  CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…
  ☆99Updated 11 months ago