JaneliaSciComp / BigStitcherLinks
ImgLib2/BDV implementation of Stitching for large datasets
☆77Updated last month
Alternatives and similar repositories for BigStitcher
Users that are interested in BigStitcher are comparing it to the libraries listed below
Sorting:
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆40Updated 6 months ago
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆69Updated 3 weeks ago
- Z-stack Depth Colorcode ImageJ FIJI plugin☆25Updated 2 months ago
- Generate markdown notebooks from ImageJ Macro☆26Updated 4 years ago
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆89Updated this week
- Accelerated Pixel and Object Classifiers (APOC)☆58Updated 3 months ago
- Tools for distributed alignment of massive images☆87Updated last month
- Create 3D/4D animations using a natural language-based syntax☆60Updated 4 months ago
- The ImageJ wiki☆28Updated last week
- Running compute-intense parts of BigStitcher distributed☆27Updated this week
- Feature extraction for labeled objects in images using regionprops from scikit-image☆52Updated 6 months ago
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆39Updated 5 months ago
- Archived: control, reconstruction, and analysis code for oblique plane microscopy.☆22Updated 7 months ago
- ☆36Updated last year
- GPU-accelerated image processing for everyone☆54Updated last year
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆19Updated last week
- ☆51Updated 6 months ago
- Reconstruct big images from overlapping tiled images on a Spark cluster.☆34Updated 2 years ago
- Track and lineage visualization with btrack and Napari☆46Updated last month
- Create movies from series of key-frames in napari.☆38Updated 4 years ago
- Process images using SimpleITK in napari☆22Updated 6 months ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆30Updated 2 weeks ago
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated 2 years ago
- Resources for teaching/preparing to teach bioimage analysis☆58Updated last week
- MultiModal Big Image Data Sharing and Exploration☆17Updated 2 years ago
- Browse your OMERO database from within napari.☆39Updated 3 weeks ago
- navigate - open source light-sheet microscope controls☆38Updated this week
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆23Updated 4 years ago
- A napari plugin for clustering objects according to their properties.☆88Updated this week
- Multiple file format reading directly into napari using pure Python☆38Updated 2 weeks ago