ImgLib2/BDV implementation of Stitching for large datasets
☆79Feb 19, 2026Updated last week
Alternatives and similar repositories for BigStitcher
Users that are interested in BigStitcher are comparing it to the libraries listed below
Sorting:
- Software for the reconstruction of multi-view microscopic acquisitions like Selective Plane Illumination Microscopy (SPIM) Data☆32Updated this week
- Running compute-intense parts of BigStitcher distributed☆30Feb 10, 2026Updated 2 weeks ago
- Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer☆12Aug 13, 2021Updated 4 years ago
- ImgLib2-based viewer for registered SPIM stacks and more☆41Jan 9, 2026Updated last month
- A tool for fast automatic 3D-stitching of teravoxel-sized microscopy images☆93Mar 5, 2024Updated last year
- Code for simulating a multi-view acquisition including attenuation, convolution, reduced sampling and poission noise☆13Jun 14, 2022Updated 3 years ago
- Helpers to use BigDataViewer as a quick visualization tool in other projects.☆25Jun 13, 2024Updated last year
- Reconstruct big images from overlapping tiled images on a Spark cluster.☆34Oct 17, 2023Updated 2 years ago
- ImageJ convenience layer for N5☆19Feb 20, 2026Updated last week
- ClearVolume is a real-time live 3D visualization library designed for high-end volumetric microscopes such as SPIM and DLSM microscopes. …☆46Feb 18, 2025Updated last year
- Janelia Workstation☆26Feb 2, 2026Updated 3 weeks ago
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆164Feb 19, 2026Updated last week
- GPU accelerated image/volume processing in Python☆113Feb 10, 2026Updated 2 weeks ago
- A JupyterBook site for napari workshop materials☆10Jul 11, 2022Updated 3 years ago
- Fiji plugins for starting BigDataViewer and exporting data.☆22Sep 19, 2025Updated 5 months ago
- Create 3D/4D animations using a natural language-based syntax☆61Jun 6, 2025Updated 8 months ago
- Fiji's Stitching plugins reconstruct big images from tiled input images.☆114Jan 22, 2025Updated last year
- Python based viewer for large mulit-dimensional datasets.☆20Jan 28, 2020Updated 6 years ago
- Icons describing multiple microscopy techniques, as used by https://www.epfl.ch/research/facilities/ptbiop/equipment/☆11Mar 13, 2023Updated 2 years ago
- A visualization app for 3D-registered data processed in ABBA and QuPath☆20Oct 21, 2022Updated 3 years ago
- MiToBo - A microscope image analysis toolbox☆13Oct 14, 2025Updated 4 months ago
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆34Aug 22, 2024Updated last year
- Tool for precise, interactive, fast and scalable FISH spot detection☆50Feb 4, 2025Updated last year
- Nextflow pipeline encapsulating workflows for analyzing expansion lattice light-sheet microscopy (ExLLSM) imagery☆14Apr 10, 2025Updated 10 months ago
- Visualizing feature measurements on label images in napari☆10Jul 24, 2024Updated last year
- ☆13Mar 10, 2020Updated 5 years ago
- ☆14Jan 25, 2024Updated 2 years ago
- A portal for viewing FIB-SEM datasets☆13Feb 21, 2026Updated last week
- ☆24Sep 13, 2025Updated 5 months ago
- (Su)per (R)egion (Vo)lume (S)egmentaton workbench☆25Jul 6, 2023Updated 2 years ago
- Tools for distributed alignment of massive images☆93Updated this week
- Dataset EXploration & Processing☆33May 11, 2023Updated 2 years ago
- Microsopic Image Analyzer (MIA)☆28Aug 19, 2025Updated 6 months ago
- Quantitative analysis of cell motility behaviors☆13Feb 21, 2025Updated last year
- BigDataViewer-based tool for visualizing multichannel multiscale N5 datasets.☆19Feb 3, 2026Updated 3 weeks ago
- Various parts made for fluorescence microscopy + optics work☆16Jul 22, 2019Updated 6 years ago
- Image stitching☆12Dec 23, 2018Updated 7 years ago
- ☆19Dec 22, 2025Updated 2 months ago
- Microscopy Image Stitching Tool☆164Aug 15, 2025Updated 6 months ago