natalie11 / tUbeNet
CNN for segmenting vasculature
β11Updated 9 months ago
Alternatives and similar repositories for tUbeNet:
Users that are interested in tUbeNet are comparing it to the libraries listed below
- π¬π₯ Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumesβ44Updated 8 months ago
- β18Updated last year
- Script that registers Histology slices to volumetric image dataβ11Updated last year
- Experimental code and examples for: Automated analysis of whole brain vasculature using machine learningβ65Updated 3 years ago
- INSPIRE: Intensity and Spatial Information-Based Deformable Image Registrationβ11Updated 3 years ago
- Python package for deep learning based image to image transformationβ50Updated 8 months ago
- Segmentation and 3D Reconstruction of Microglia and Blood Vesselβ9Updated 6 years ago
- An open-source application for the analysis and visualization of segmented vasculature datasetsβ104Updated 8 months ago
- A high-performance deep-learning-based pipeline for whole-brain vasculature segmentation at the capillary resolutionβ12Updated 9 months ago
- Python Vascular Network Analysisβ22Updated 9 months ago
- TubeTK is an open-source toolkit for the segmentation, registration, and analysis of tubes and surfaces in images, developed by Kitware, β¦β48Updated last week
- β36Updated 11 months ago
- Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.β83Updated this week
- C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.β54Updated 2 weeks ago
- MorphoFeatures code and dataβ20Updated last year
- Easy Volumetric Segmentation with Deep Learningβ22Updated 3 months ago
- β81Updated 2 months ago
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.β32Updated 2 years ago
- simple package for augmentation of n-dimensional arraysβ32Updated last year
- Software for automatic segmentation and generation of standardized clinical reports of brain tumors from MRI volumesβ37Updated last week
- ClearMap 2 with WobblyStitcher, TubeMap and CellMapβ119Updated this week
- Official implementation of "A novel deep learning-based 3D cell segmentation framework for future image-based disease detection". (Howeveβ¦β19Updated last year
- Automatic sorting of brain MRI scans by scan typeβ24Updated last month
- 2D image registration in python, using napari.β16Updated 3 years ago
- Neuroclear is a deep-learning-based Python module to train a deep neural network for the task of applying super-resolution to degraded axβ¦β28Updated 3 weeks ago
- 3D Slicer plugin for Liver Anatomy Annotation by R-Vessel-Xβ35Updated 7 months ago
- A lightweight, interactive, extensible and cross-platform framework for building, visualizing and analyzing vasculature (or blood vesselsβ¦β44Updated last year
- This extension makes available Elastix medical image registration toolkit (http://elastix.isi.uu.nl/) available in Slicer.β51Updated 3 weeks ago
- A napari plugin for itk-elastixβ38Updated 8 months ago