Cancer Drug Response prediction using a Recommender System
☆43Jul 6, 2023Updated 2 years ago
Alternatives and similar repositories for CaDRReS
Users that are interested in CaDRReS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Search public databases for given genotypic information☆12Mar 21, 2018Updated 8 years ago
- A visible neural network model for drug response prediction☆155Sep 13, 2023Updated 2 years ago
- Pipeline for Illumina shotgun sequencing of 16S rRNA amplicon sequences☆14Sep 2, 2016Updated 9 years ago
- CaDRReS-Sc is a framework for analyzing drug response heterogeneity based on single-cell RNA-seq data☆19May 7, 2022Updated 3 years ago
- GraphCDR: A graph neural network method with contrastive learning for cancer drug response prediction☆32Sep 27, 2021Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Core code for the paper "A deep learning model for drug response prediction from cancer genomic signatures and compound chemical structur…☆22Sep 21, 2021Updated 4 years ago
- Standalone shiny server container for viewing CellChat object☆13Feb 18, 2021Updated 5 years ago
- Collection of notes and scripts related to NGS☆14Feb 18, 2026Updated 2 months ago
- Personalized Medicine: Redefining Cancer Treatment with deep learning☆24Nov 22, 2017Updated 8 years ago
- ☆21Nov 15, 2020Updated 5 years ago
- MOLI: Multi-Omics Late Integration with deep neural networks for drug response prediction☆54Sep 22, 2020Updated 5 years ago
- ☆11Apr 19, 2019Updated 7 years ago
- LACE 2.0 is a new release of the LACE R Bioconductor package, which provides an interactive user interface to perform clonal evolution an…☆15Apr 7, 2026Updated 3 weeks ago
- Software for detecting transposable element insertions from next-generation sequencing data☆14Mar 12, 2021Updated 5 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Materials and scripts for building cell type encyclopedia table☆20Mar 16, 2026Updated last month
- R package that allows for visualization of the KNN of an embedding compared to the KNN of the original high-dimensional data.☆21May 21, 2025Updated 11 months ago
- DNN-DTIs: improved drug-target interactions prediction using XGBoost feature selection and deep neural network☆12Mar 5, 2021Updated 5 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆45Sep 3, 2025Updated 7 months ago
- PyTorch implementation of bimodal neural networks for drug-cell (pharmarcogenomics) and drug-protein (proteochemometrics) interaction pre…☆53Feb 11, 2026Updated 2 months ago
- Machine Learning predictions of cancer cell sensitivity to different drugs using data from CCLE (Cancer Cell Line Encyclopedia).☆15Feb 6, 2017Updated 9 years ago
- A package to count reads mapping on transposable elements subfamilies, families and classes.☆12Feb 3, 2023Updated 3 years ago
- ChIP-seq/RNA-seq analysis software suite for gene expression heatmaps☆23Oct 12, 2017Updated 8 years ago
- Code to reproduce analysis of Milo manuscript☆15Aug 3, 2022Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- 📊Evaluating, filtering, comparing, and visualising VCF☆29Mar 9, 2023Updated 3 years ago
- The Supplementary data in the paper "A Survey and Systematic Assessment of Computational Methods for Drug Response Prediction"☆12Sep 27, 2019Updated 6 years ago
- ☆10Aug 5, 2021Updated 4 years ago
- Molecular Oncology Almanac, a clinical interpretation algorithm paired with a novel underlying knowledge base for precision cancer medici…☆18Feb 2, 2026Updated 3 months ago
- Shiny app for making and annotating Volcano plots☆25Dec 12, 2025Updated 4 months ago
- ActiveDriverDB☆12May 1, 2023Updated 3 years ago
- scLearn：Learning for single cell assignment☆35Dec 13, 2024Updated last year
- R functions for automation of biomarker discovery based on processing downstream of large LC-MS datasets from any peak picking software☆10May 17, 2017Updated 8 years ago
- Kernelized Bayesian Matrix Factorization☆17Mar 17, 2018Updated 8 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Invertory of TE-gene isoforms☆14Sep 18, 2023Updated 2 years ago
- ☆11Feb 1, 2023Updated 3 years ago
- ☆39Aug 14, 2019Updated 6 years ago
- Materials for the workshop "Applications of NLP in EdTech" at Open Data Science Conference (West), 2019.☆15Dec 8, 2022Updated 3 years ago
- What you need to process the Quarterly DepMap-Omics releases from Terra☆125Feb 5, 2026Updated 2 months ago
- Template for DESeq2 Analysis of RNA-seq data☆17Mar 29, 2019Updated 7 years ago
- A server for maintaining high-throughput sequencing QC data☆13Aug 5, 2025Updated 8 months ago