Cancer Drug Response prediction using a Recommender System
☆43Jul 6, 2023Updated 2 years ago
Alternatives and similar repositories for CaDRReS
Users that are interested in CaDRReS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Search public databases for given genotypic information☆12Mar 21, 2018Updated 8 years ago
- Cancer Drug Response Prediction via a Hybrid Graph Convolutional Network☆104Jun 26, 2023Updated 2 years ago
- A visible neural network model for drug response prediction☆157Sep 13, 2023Updated 2 years ago
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆14Oct 21, 2024Updated last year
- Pipeline for Illumina shotgun sequencing of 16S rRNA amplicon sequences☆14Sep 2, 2016Updated 9 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- GraphCDR: A graph neural network method with contrastive learning for cancer drug response prediction☆32Sep 27, 2021Updated 4 years ago
- Core code for the paper "A deep learning model for drug response prediction from cancer genomic signatures and compound chemical structur…☆22Sep 21, 2021Updated 4 years ago
- Standalone shiny server container for viewing CellChat object☆13Feb 18, 2021Updated 5 years ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆17Aug 12, 2022Updated 3 years ago
- Collection of notes and scripts related to NGS☆14Feb 18, 2026Updated 3 months ago
- Personalized Medicine: Redefining Cancer Treatment with deep learning☆24Nov 22, 2017Updated 8 years ago
- ☆21Nov 15, 2020Updated 5 years ago
- MOLI: Multi-Omics Late Integration with deep neural networks for drug response prediction☆54Sep 22, 2020Updated 5 years ago
- ☆11Apr 19, 2019Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- LACE 2.0 is a new release of the LACE R Bioconductor package, which provides an interactive user interface to perform clonal evolution an…☆15Apr 7, 2026Updated 2 months ago
- Python code for "Bayesian hybrid matrix factorisation for data integration", published at 20th International Conference on Artificial Int…☆13Jun 10, 2018Updated 8 years ago
- Software for detecting transposable element insertions from next-generation sequencing data☆14Mar 12, 2021Updated 5 years ago
- Materials and scripts for building cell type encyclopedia table☆20Mar 16, 2026Updated 2 months ago
- R package that allows for visualization of the KNN of an embedding compared to the KNN of the original high-dimensional data.☆21May 21, 2025Updated last year
- DNN-DTIs: improved drug-target interactions prediction using XGBoost feature selection and deep neural network☆12Mar 5, 2021Updated 5 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆47Sep 3, 2025Updated 9 months ago
- PyTorch implementation of bimodal neural networks for drug-cell (pharmarcogenomics) and drug-protein (proteochemometrics) interaction pre…☆53Feb 11, 2026Updated 4 months ago
- Machine Learning predictions of cancer cell sensitivity to different drugs using data from CCLE (Cancer Cell Line Encyclopedia).☆15Feb 6, 2017Updated 9 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Code to reproduce analysis of Milo manuscript☆15Aug 3, 2022Updated 3 years ago
- RefDNN: a reference drug based neural network for more accurate prediction of anticancer drug resistance (Scientific Reports)☆14Apr 21, 2022Updated 4 years ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆29Mar 9, 2023Updated 3 years ago
- The Supplementary data in the paper "A Survey and Systematic Assessment of Computational Methods for Drug Response Prediction"☆12Sep 27, 2019Updated 6 years ago
- ☆10Aug 5, 2021Updated 4 years ago
- Molecular Oncology Almanac, a clinical interpretation algorithm paired with a novel underlying knowledge base for precision cancer medici…☆41May 20, 2026Updated 3 weeks ago
- ActiveDriverDB☆12May 1, 2023Updated 3 years ago
- scLearn：Learning for single cell assignment☆35Dec 13, 2024Updated last year
- R functions for automation of biomarker discovery based on processing downstream of large LC-MS datasets from any peak picking software☆10May 17, 2017Updated 9 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Kernelized Bayesian Matrix Factorization☆17Mar 17, 2018Updated 8 years ago
- Invertory of TE-gene isoforms☆14Sep 18, 2023Updated 2 years ago
- Implementation prototype of the Deep Deterministic Off-Policy Gradient (DD-OPG) method.☆11Jun 12, 2019Updated 6 years ago
- ☆11Feb 1, 2023Updated 3 years ago
- mantis-ml: Stochastic semi-supervised learning to prioritise genes from high throughput genomic screens☆31Jan 26, 2024Updated 2 years ago
- ☆39Aug 14, 2019Updated 6 years ago
- What you need to process the Quarterly DepMap-Omics releases from Terra☆125May 21, 2026Updated 3 weeks ago