TranslationalBioinformaticsUnit / singlecelldbLinks
An actionable database of publicly available single-cell RNA-seq data
☆41Updated 6 years ago
Alternatives and similar repositories for singlecelldb
Users that are interested in singlecelldb are comparing it to the libraries listed below
Sorting:
- A BLAST-like toolkit for large-scale scRNA-seq data querying and annotation.☆91Updated 10 months ago
- ☆130Updated last year
- cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data☆140Updated last year
- Single-cell ATAC-seq analysis via Latent feature Extraction☆102Updated last year
- R package to access DoRothEA's regulons☆148Updated last year
- R script for the covid balf data analysis☆65Updated 4 years ago
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆88Updated 5 years ago
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆110Updated last year
- Benchmarking computational single cell ATAC-seq methods☆183Updated 4 years ago
- Single-cell RNA-seq Gene Expression Recovery☆110Updated 6 months ago
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆132Updated 2 years ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆73Updated 4 months ago
- Deep learning model for single-cell inference of multi-omic profiles from a single input modality.☆42Updated last year
- Clonotype Neighbor Graph Analysis☆89Updated 2 months ago
- ☆46Updated 3 years ago
- Online single-cell data integration through projecting heterogeneous datasets into a common cell-embedding space☆77Updated 3 weeks ago
- Tools used in Human Cell Landscape(HCL)☆54Updated 4 years ago
- A package for automated processing of single cell RNA-seq data in cancer☆108Updated 7 months ago
- ☆90Updated 4 years ago
- Imputation method for scRNA-seq based on low-rank approximation☆74Updated last year
- SingleCellNet: classify single cells across species and platforms☆137Updated last year
- Single-Cell Clustering Assessment Framework☆101Updated last year
- ☆85Updated 4 years ago
- repository containing analysis scripts and auxiliary files☆34Updated 5 years ago
- Python implementation of Milo for differential abundance testing on KNN graph☆68Updated 3 months ago
- Bench-marking classification tools for scRNA-seq data☆186Updated 2 years ago
- Additional code and analysis from the single-cell integration benchmarking project