TranslationalBioinformaticsUnit / singlecelldb

Related projects ⓘ

Alternatives and complementary repositories for singlecelldb

• gao-lab / Cell_BLAST
  A BLAST-like toolkit for large-scale scRNA-seq data querying and annotation.
  ☆86Updated 3 months ago
• wukevin / babel
  Deep learning model for single-cell inference of multi-omic profiles from a single input modality.
  ☆38Updated last year
• jsxlei / SCALE
  Single-cell ATAC-seq analysis via Latent feature Extraction
  ☆100Updated last year
• saezlab / dorothea
  R package to access DoRothEA's regulons
  ☆133Updated 8 months ago
• pinellolab / scATAC-benchmarking
  Benchmarking computational single cell ATAC-seq methods
  ☆177Updated 3 years ago
• CahanLab / singleCellNet
  SingleCellNet: classify single cells across species and platforms
  ☆131Updated last year
• KrishnaswamyLab / SingleCellWorkshop
  ☆88Updated 3 years ago
• mohuangx / SAVER
  Single-cell RNA-seq Gene Expression Recovery
  ☆110Updated 2 years ago
• LewisLabUCSD / Ligand-Receptor-Pairs
  Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.
  ☆119Updated last year
• aertslab / cisTopic
  cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data
  ☆135Updated 7 months ago
• rajewsky-lab / novosparc
  ☆126Updated 11 months ago
• zhangzlab / covid_balf
  R script for the covid balf data analysis
  ☆64Updated 4 years ago
• SCCAF / sccaf
  Single-Cell Clustering Assessment Framework
  ☆91Updated last year
• livnatje / DIALOGUE
  DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…
  ☆104Updated 9 months ago
• Hughes-Genome-Group / deepC
  A neural network framework for predicting the Hi-C chromatin interactions from megabase scale DNA sequence
  ☆33Updated 5 months ago
• scverse / scanpy_usage
  Scanpy use cases.
  ☆77Updated 4 years ago
• AltschulerWu-Lab / scScope
  ☆48Updated 5 years ago
• tabdelaal / scRNAseq_Benchmark
  Bench-marking classification tools for scRNA-seq data
  ☆183Updated 2 years ago
• favilaco / deconv_benchmark
  ☆55Updated 3 years ago
• xiaoyeye / CNNC
  covolutional neural network based coexpression analysis
  ☆74Updated 4 years ago
• 10XGenomics / single-cell-3prime-paper
  ☆83Updated 4 years ago
• changwn / scFEA
  single cell Flux Estimation Analysis (scFEA) Try the below web server!
  ☆99Updated last year
• cellgeni / batchbench
  ☆47Updated 2 years ago
• asncd / MIMOSCA
  A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.
  ☆85Updated 5 years ago
• digitalcytometry / ecotyper
  EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.
  ☆183Updated 7 months ago
• jsxlei / SCALEX
  Online single-cell data integration through projecting heterogeneous datasets into a common cell-embedding space
  ☆72Updated 3 weeks ago
• cistrome / MIRA
  Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
  ☆59Updated 6 months ago
• brianhie / geosketch
  Geometry-preserving random sampling
  ☆75Updated last week
• zktuong / dandelion
  dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data
  ☆108Updated this week
• LocasaleLab / Single-Cell-Metabolic-Landscape
  Pipeline for exploring metebolic heterogeneity at single-cell resolution
  ☆72Updated 4 years ago