TranslationalBioinformaticsUnit / singlecelldb
An actionable database of publicly available single-cell RNA-seq data
☆41Updated 5 years ago
Related projects ⓘ
Alternatives and complementary repositories for singlecelldb
- A BLAST-like toolkit for large-scale scRNA-seq data querying and annotation.☆86Updated 4 months ago
- cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data☆135Updated 7 months ago
- ☆126Updated last year
- Single-cell ATAC-seq analysis via Latent feature Extraction☆100Updated last year
- Deep learning model for single-cell inference of multi-omic profiles from a single input modality.☆39Updated last year
- ☆88Updated 3 years ago
- R package to access DoRothEA's regulons☆133Updated 9 months ago
- SingleCellNet: classify single cells across species and platforms☆131Updated last year
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆121Updated last year
- Benchmarking computational single cell ATAC-seq methods☆177Updated 3 years ago
- Single-cell RNA-seq Gene Expression Recovery☆109Updated 2 years ago
- R script for the covid balf data analysis☆64Updated 4 years ago
- ☆47Updated 2 years ago
- Single-Cell Clustering Assessment Framework☆93Updated last year
- A package for automated processing of single cell RNA-seq data in cancer☆99Updated last month
- Tools used in Human Cell Landscape(HCL)☆53Updated 4 years ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆66Updated last year
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆105Updated 10 months ago
- SCSA: cell type annotation for single-cell RNA-seq data☆82Updated last year
- Scanpy use cases.☆77Updated 4 years ago
- A tool for detecting somatic variants in single cell data☆170Updated 2 months ago
- An unsupervised approach for the integrative analysis of single-cell multi-omics data☆28Updated 4 years ago
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆72Updated 4 years ago
- ☆108Updated 2 years ago
- Predict RNA velocity through deep learning☆64Updated 11 months ago
- Single Cell Generative Adversarial Network (scGAN)☆13Updated 4 years ago
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆102Updated last year
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆123Updated this week
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆184Updated 7 months ago
- Imputation method for scRNA-seq based on low-rank approximation☆73Updated 11 months ago