Alternatives and similar repositories for DeepLearning-in-Bioinformatics:

Users that are interested in DeepLearning-in-Bioinformatics are comparing it to the libraries listed below

• kipoi / models
  Model zoo for genomics
  ☆166Updated 9 months ago
• cmap / cmapPy
  Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute) data/tools
  ☆130Updated 2 years ago
• vanessajurtz / lasagne4bio
  ☆107Updated 6 years ago
• FunctionLab / ExPecto
  predicting expression effects of human genome variants ab initio from sequence
  ☆127Updated 3 months ago
• MedChaabane / DeepBind-with-PyTorch
  CNN architecture for predicting DNA binding sites for Transcription Factors
  ☆52Updated 6 years ago
• nh2tran / DeepNovo
  Protein Identification with Deep Learning
  ☆96Updated 4 years ago
• openvax / mhctools
  Python interface to running command-line and web-based MHC binding predictors
  ☆96Updated 7 months ago
• Illumina / PrimateAI
  deep residual neural network for classifying the pathogenicity of missense mutations.
  ☆114Updated 3 years ago
• budach / pysster
  pysster: Learning Sequence And Structure Motifs In Biological Sequences Using Convolutional Neural Networks
  ☆86Updated 5 years ago
• kundajelab / bpnet
  Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them
  ☆152Updated 9 months ago
• xypan1232 / iDeep
  iDeep: integrated prediction of RNA-protein binding sites using deep learning
  ☆39Updated 4 years ago
• openvax / mhcflurry
  Peptide-MHC I binding affinity prediction
  ☆203Updated last month
• JJAlmagro / subcellular_localization
  ☆59Updated 7 years ago
• varnivey / ipanda
  insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…
  ☆25Updated 8 years ago
• Xinglab / DARTS
  Deep-learning Augmented RNA-seq analysis of Transcript Splicing
  ☆111Updated last year
• gecrooks / weblogo
  WebLogo 3: Sequence Logos redrawn
  ☆149Updated 4 months ago
• bm2-lab / DeepCRISPR
  ☆60Updated 2 years ago
• boscoh / uniprot
  retrieve protein sequence identifiers and metadata from http://uniprot.org
  ☆67Updated 3 years ago
• RTH-tools / crispron
  CRISPR Cas9 ontarget prediction software
  ☆26Updated 2 months ago
• kundajelab / tfmodisco
  TF MOtif Discovery from Importance SCOres
  ☆136Updated last year
• liyu95 / Deep_learning_examples
  Examples of using deep learning in Bioinformatics
  ☆422Updated last year
• broadinstitute / depmap_omics
  What you need to process the Quarterly DepMap-Omics releases from Terra
  ☆115Updated last week
• CSB5 / CaDRReS
  Cancer Drug Response prediction using a Recommender System
  ☆42Updated last year
• jisraeli / DeepBind
  Training and testing of DeepBind models.
  ☆95Updated 9 years ago
• churchmanlab / genewalk
  GeneWalk identifies relevant gene functions for a biological context using network representation learning
  ☆131Updated 9 months ago
• uci-cbcl / D-GEX
  Deep learning for gene expression inference
  ☆145Updated 6 years ago
• MyungjaeSong / Paired-Library
  ☆54Updated 3 years ago
• emreg00 / toolbox
  Toolbox - generic utilities for data processing (e.g., parsing, proximity, guild scoring, etc...)
  ☆110Updated 3 years ago
• TranslationalBioinformaticsUnit / singlecelldb
  An actionable database of publicly available single-cell RNA-seq data
  ☆41Updated 6 years ago
• crazyhottommy / machine-learning-resource
  ☆80Updated 5 months ago