Toolbox - generic utilities for data processing (e.g., parsing, proximity, guild scoring, etc...)
☆115Apr 2, 2022Updated 4 years ago
Alternatives and similar repositories for toolbox
Users that are interested in toolbox are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Deep Learning Can Identify Explainable Reasoning Paths of Mechanism of Drug Action for Drug Repurposing from Multilayer Biological Networ…☆12Aug 19, 2024Updated 2 years ago
- Supplementary code for the paper: Network Medicine Framework for Identifying Drug Repurposing Opportunities for COVID-19☆29Mar 8, 2021Updated 5 years ago
- Orientation of the protein-protein interaction network using network diffusion techniques☆15Mar 16, 2021Updated 5 years ago
- Reproducible drug repurposing: a Python-based framework for building drug-disease association classifiers☆17May 7, 2018Updated 8 years ago
- ☆10Jul 4, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- The source code and results for different methods on annotating external testing datsets of human and mouse.☆13Apr 21, 2021Updated 5 years ago
- ☆20Aug 28, 2026Updated 2 months ago
- Drug repositioning based on Heterogeneous network and Text Mining☆14Jun 15, 2021Updated 5 years ago
- Source code and datasets for PresRecRF published on Phytomedicine.☆15May 18, 2025Updated last year
- A deep learning toolkit for LINCS L1000 expression data☆10Aug 25, 2021Updated 5 years ago
- Predicting drug-target interactions using Lasso with random forest based on evolutionary information and chemical structure☆10Nov 19, 2018Updated 7 years ago
- Use python to parse the Drugbank.xml file, including drug-target interaction, drug-drug interaction, drug classification, drug descriptio…☆29Oct 11, 2022Updated 4 years ago
- Predicting mechanism of action of novelcompounds using compound structure andtranscriptomic signature co-embedding☆14Oct 17, 2023Updated 3 years ago
- Drug-target interaction prediction using deepWalk node embedding algorithm on drugBank☆11Nov 8, 2020Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- NRLMFβ: Bata-distribution-rescored Neighborhood Regularized Logistic Matrix Factorization for Improving Performance of Drug–Target Intera…☆11Oct 12, 2021Updated 5 years ago
- Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute) data/tools☆146Aug 26, 2026Updated 2 months ago
- A deep generative neural network based approach to impute drug response☆21May 30, 2021Updated 5 years ago
- ☆20Sep 14, 2024Updated 2 years ago
- Cancer Drug Response prediction using a Recommender System☆43Jul 6, 2023Updated 3 years ago
- ☆34Dec 16, 2018Updated 7 years ago
- SmuDGE: Semantic Disease Gene Embeddings☆11Jul 11, 2018Updated 8 years ago
- ☆17Apr 14, 2024Updated 2 years ago
- Realizing DTINet with python☆27May 11, 2018Updated 8 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Deep Generative Models for Drug Combination (Graph Set) Generation given Hierarchical Disease Network Embedding☆32Mar 25, 2023Updated 3 years ago
- Predictors for Blood-Brain Barrier Permeability with resampling strategies based on B3DB database.☆13Aug 12, 2025Updated last year
- The official code implementation for DREAMwalk in Python.☆31Jul 28, 2023Updated 3 years ago
- all-paths graph kernel for protein-protein interaction extraction☆12Apr 22, 2014Updated 12 years ago
- Graph Neural Networks for Drug Efficacy Prediction☆12Sep 11, 2022Updated 4 years ago
- Library of Integrated Cellular Signatures L1000☆31Apr 21, 2022Updated 4 years ago
- A deep learning framework for high-throughput mechanism-driven phenotype screening☆57Mar 27, 2021Updated 5 years ago
- Shiny-Seq: A web based interactive pipeline to analyze RNA-Seq data☆14Jan 14, 2018Updated 8 years ago
- Data and basic scrubbing of the FDA Adverse Event Reporting System data☆14Aug 1, 2015Updated 11 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Network-based Drug Repurposing for Human Coronavirus☆41Feb 4, 2020Updated 6 years ago
- ☆57Jul 29, 2019Updated 7 years ago
- Coherent Deconfounding Autoencoder (CODE-AE) can extract both common biological signals shared by incoherent samples and private represen…☆20Oct 1, 2024Updated 2 years ago
- Python 2.7 package with examples for evaluating a network's ability to group a given node set in network proximity.☆34Mar 24, 2023Updated 3 years ago
- TwiMed: Twitter and PubMed Comparable Corpus of Drugs, Diseases, Symptoms and their Relations☆11May 24, 2017Updated 9 years ago
- ☆31Aug 17, 2026Updated 2 months ago
- This repository provides an implementation of the DTiGEMSplus tool, a network-based method for computational Drug-Target Interaction pred…☆27Sep 28, 2021Updated 5 years ago