Toolbox - generic utilities for data processing (e.g., parsing, proximity, guild scoring, etc...)
☆113Apr 2, 2022Updated 3 years ago
Alternatives and similar repositories for toolbox
Users that are interested in toolbox are comparing it to the libraries listed below
Sorting:
- Drug-disease proximity based therapeutic effect screening and analysis☆21Sep 8, 2017Updated 8 years ago
- Reproducible drug repurposing: a Python-based framework for building drug-disease association classifiers☆17May 7, 2018Updated 7 years ago
- ☆19Jul 8, 2021Updated 4 years ago
- Orientation of the protein-protein interaction network using network diffusion techniques☆15Mar 16, 2021Updated 5 years ago
- The source code and results for different methods on annotating external testing datsets of human and mouse.☆12Apr 21, 2021Updated 4 years ago
- Supplementary code for the paper: Network Medicine Framework for Identifying Drug Repurposing Opportunities for COVID-19☆28Mar 8, 2021Updated 5 years ago
- Predicting drug-target interactions using Lasso with random forest based on evolutionary information and chemical structure☆10Nov 19, 2018Updated 7 years ago
- Predicting mechanism of action of novelcompounds using compound structure andtranscriptomic signature co-embedding☆14Oct 17, 2023Updated 2 years ago
- NRLMFβ: Bata-distribution-rescored Neighborhood Regularized Logistic Matrix Factorization for Improving Performance of Drug–Target Intera…☆11Oct 12, 2021Updated 4 years ago
- ☆10Aug 5, 2021Updated 4 years ago
- ☆17Apr 14, 2024Updated last year
- Predictors for Blood-Brain Barrier Permeability with resampling strategies based on B3DB database.☆13Aug 12, 2025Updated 7 months ago
- A deep generative neural network based approach to impute drug response☆21May 30, 2021Updated 4 years ago
- Cancer Drug Response prediction using a Recommender System☆43Jul 6, 2023Updated 2 years ago
- Drug repositioning based on Heterogeneous network and Text Mining☆14Jun 15, 2021Updated 4 years ago
- all-paths graph kernel for protein-protein interaction extraction☆12Apr 22, 2014Updated 11 years ago
- A deep learning framework for high-throughput mechanism-driven phenotype screening☆52Mar 27, 2021Updated 4 years ago
- ☆29Feb 6, 2026Updated last month
- Deep Generative Models for Drug Combination (Graph Set) Generation given Hierarchical Disease Network Embedding☆31Mar 25, 2023Updated 2 years ago
- Library of Integrated Cellular Signatures L1000☆30Apr 21, 2022Updated 3 years ago
- ☆37Oct 8, 2021Updated 4 years ago
- Data and basic scrubbing of the FDA Adverse Event Reporting System data☆14Aug 1, 2015Updated 10 years ago
- Shiny-Seq: A web based interactive pipeline to analyze RNA-Seq data☆15Jan 14, 2018Updated 8 years ago
- Interactive 3D visualization of networks with multiple layers☆34May 21, 2025Updated 10 months ago
- Python 2.7 package with examples for evaluating a network's ability to group a given node set in network proximity.☆34Mar 24, 2023Updated 2 years ago
- TwiMed: Twitter and PubMed Comparable Corpus of Drugs, Diseases, Symptoms and their Relations☆11May 24, 2017Updated 8 years ago
- Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute) data/tools☆140Jul 19, 2022Updated 3 years ago
- ☆11Jan 20, 2020Updated 6 years ago
- Processing SIDER 4.1: the side effect resource☆23Feb 3, 2016Updated 10 years ago
- Cross matching drugs from different databases ( Drugbank, STITCH, ChEMBL PubChem, UMLS, TTD, KEGG, ZINC ) and saving in a structured TSV …☆34Jan 22, 2024Updated 2 years ago
- ☆11Oct 31, 2021Updated 4 years ago
- Network-based Drug Repurposing for Human Coronavirus☆41Feb 4, 2020Updated 6 years ago
- ☆34Nov 24, 2020Updated 5 years ago
- MVGCN: a novel multi-view graph convolutional network (MVGCN) framework for link prediction in biomedical bipartite networks.☆22Aug 19, 2022Updated 3 years ago
- SIDER – Side Effect Resource☆20Aug 11, 2016Updated 9 years ago
- Elucidate and visualise a compound's mechanism of action by combining structure-based target prediction with gene expression-based causal…☆13Feb 11, 2023Updated 3 years ago
- ☆20May 25, 2020Updated 5 years ago
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆14Oct 21, 2024Updated last year
- Connect the dots in networks.☆20Aug 28, 2020Updated 5 years ago