Towards Gene Expression Convolutions using Gene Interaction Graphs
☆76Jan 7, 2022Updated 4 years ago
Alternatives and similar repositories for gene-graph-conv
Users that are interested in gene-graph-conv are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- API for Python☆47Apr 13, 2026Updated 2 months ago
- GEDFN: Graph-Embedded Deep Feedforward Network☆23Apr 23, 2019Updated 7 years ago
- pysster: Learning Sequence And Structure Motifs In Biological Sequences Using Convolutional Neural Networks☆86Oct 22, 2019Updated 6 years ago
- ☆23Sep 1, 2022Updated 3 years ago
- Transcriptome State Perturbation Generator☆13Dec 3, 2021Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Data and code related to the paper "ADAGE-Based Integration of Publicly Available Pseudomonas aeruginosa..." Jie Tan, et al · mSystems · …☆61May 26, 2016Updated 10 years ago
- A mini-framework to build and train neural networks for molecular biology.☆10Mar 23, 2018Updated 8 years ago
- ☆10Feb 3, 2020Updated 6 years ago
- Implementation for Phenotype prediction from single-cell RNA-seq data using attention-based neural networks (Bioinformatics 2024).☆13Jul 15, 2024Updated last year
- Deep learning for gene expression inference☆147Feb 18, 2019Updated 7 years ago
- Applied Statistics for High-Throughput Biology☆16Updated this week
- ☆20Mar 21, 2021Updated 5 years ago
- Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.☆17Nov 20, 2018Updated 7 years ago
- ☆16Feb 11, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Deep learning for single-cell transcript counts☆89Mar 14, 2025Updated last year
- "DeepDiff: Deep-learning for predicting Differential gene expression from histone modifications", Bioinformatics, Volume 34, Issue 17,☆21Dec 10, 2019Updated 6 years ago
- ACTIONet single-cell analysis framework☆46Sep 16, 2024Updated last year
- VEGA: VAE Enhanced by Gene Annotations☆18May 5, 2022Updated 4 years ago
- ☆14Nov 14, 2019Updated 6 years ago
- Study done with the dataset of the Parkinson’s Disease Digital Biomarker DREAM Challenge☆11Jan 9, 2018Updated 8 years ago
- TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade…☆46Mar 13, 2026Updated 3 months ago
- ISMB 2020: Improved survival analysis by learning shared genomic information from pan-cancer data☆17Jul 13, 2020Updated 5 years ago
- Personal experiments and implementation examples of deep learning papers.☆11Jan 23, 2018Updated 8 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- The Genomics Tertiary Analysis and Machine Learning Using Amazon SageMaker solution creates a scalable environment in AWS to develop mach…☆11Jul 7, 2023Updated 3 years ago
- A list of deep learning implementations in biology☆2,148Mar 4, 2026Updated 4 months ago
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆18Aug 18, 2022Updated 3 years ago
- predicting expression effects of human genome variants ab initio from sequence☆137Jan 28, 2025Updated last year
- Pathway-based sparse deep neural network for survival analysis☆40Jul 6, 2023Updated 3 years ago
- ☆52Jul 23, 2020Updated 5 years ago
- This is the repository for paper titled as "Convolutional neural network models for cancer type prediction based on gene expression".☆56May 8, 2019Updated 7 years ago
- ☆15Jun 17, 2021Updated 5 years ago
- Research Paper: "Graph Contrastive Learning as a Versatile Foundation for Advanced scRNA-seq Data Analysis"☆10Nov 20, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- An integrated analysis toolkit and pipeline for Next-Generation Sequencing (NGS) panel sequencing data☆14Aug 16, 2018Updated 7 years ago
- Functions for handling RNA-seq files and formats as input and output for scrattch functions.☆11Aug 20, 2025Updated 10 months ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Apr 19, 2021Updated 5 years ago
- Course materials for Computational Biology and Bioinformatics - BI462☆28Nov 2, 2017Updated 8 years ago
- Functional and Learnable Cell dynamicS☆21May 13, 2025Updated last year
- Integrated Cell project implemented in pytorch☆44Oct 15, 2025Updated 8 months ago
- Genepy is an open source utils package covering a range of useful functions for large scale genomics data analysis in python☆21May 22, 2023Updated 3 years ago