Alternatives and similar repositories for GEDFN

Users that are interested in GEDFN are comparing it to the libraries listed below

• idekerlab / Network_Evaluation_Tools
  Python 2.7 package with examples for evaluating a network's ability to group a given node set in network proximity.
  ☆32Updated 2 years ago
• TeoSakel / deep-drug-response
  ☆19Updated 5 years ago
• mickaelleclercq / BioDiscML
  Large-scale automatic feature selection for biomarker discovery in high-dimensional OMICs data
  ☆32Updated 4 months ago
• arefeen / DeepPASTA
  ☆10Updated 5 years ago
• CCSB-DFCI / HuRI_paper
  Code for the analyses in the human reference interactome paper.
  ☆28Updated 2 years ago
• BIMSBbioinfo / maui
  Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit
  ☆50Updated 2 years ago
• zeochoy / tcga-embedding
  using shallow neural network layer (embedding) to infer gene-gene/sample relationship from gene expression data
  ☆21Updated 7 years ago
• HarveyYan / RNATracker
  Prediction of mRNA subcellular localization using deep recurrent neural networks
  ☆15Updated 6 years ago
• ushaham / BatchEffectRemoval
  ☆57Updated 5 years ago
• CancerRxGene / gdsctools
  Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )
  ☆36Updated 3 years ago
• varnivey / ipanda
  insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…
  ☆28Updated 8 years ago
• xypan1232 / iDeep
  iDeep: integrated prediction of RNA-protein binding sites using deep learning
  ☆39Updated 5 years ago
• krishnanlab / GenePlexus
  Data, results, and code accompanying the manuscript: "Supervised learning is an accurate method for network-based gene classification"
  ☆10Updated 4 years ago
• mims-harvard / pathways
  Disease pathways in the human interactome
  ☆23Updated 7 years ago
• cmap / cmapM
  Connectivity Map analysis in MATLAB
  ☆46Updated 3 years ago
• xypan1232 / IPMiner
  Predicting ncRNA-protein interaction using high-level features based on deep learning
  ☆15Updated 5 years ago
• ceiron61 / TargetPred
  In Silico Prediction of Novel Therapeutic Targets Using Gene – Disease Association Data
  ☆18Updated 7 years ago
• NeilPearson-Lilly / TractaViewer
  ☆11Updated 5 years ago
• bowang87 / SIMLR_PY
  Python Implementation of SIMLR for single-cell visualization and analysis
  ☆24Updated 3 years ago
• uci-cbcl / FactorNet
  A deep learning package for predicting TF binding
  ☆42Updated 5 years ago
• bowang-lab / BIONIC
  Biological Network Integration using Convolutions
  ☆63Updated last year
• kundajelab / coessentiality
  Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)
  ☆27Updated 3 years ago
• CSB5 / CaDRReS
  Cancer Drug Response prediction using a Recommender System
  ☆42Updated 2 years ago
• ShenLab / missense
  MVP (Qi et al 2021) source code
  ☆17Updated 4 years ago
• bio-ontology-research-group / DeepMOCCA
  Graph Neural Network model for survival analysis from multi-omics data
  ☆14Updated 3 years ago
• kuijjerlab / retriever
  Generate Robust Disease-Specific Response Signatures from the LINCS-L1000 Data
  ☆15Updated 3 years ago
• gagneurlab / concise
  Concise: Keras extension for regulatory genomics
  ☆35Updated 2 years ago
• CancerRxGene / gdscIC50
  An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.
  ☆28Updated 2 years ago
• GreiffLab / immuneSIM
  ☆38Updated 2 years ago
• budach / pysster
  pysster: Learning Sequence And Structure Motifs In Biological Sequences Using Convolutional Neural Networks
  ☆86Updated 6 years ago