MOLI: Multi-Omics Late Integration with deep neural networks for drug response prediction
☆55Sep 22, 2020Updated 5 years ago
Alternatives and similar repositories for MOLI
Users that are interested in MOLI are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Cancer Drug Response Prediction via a Hybrid Graph Convolutional Network☆103Jun 26, 2023Updated 2 years ago
- The Supplementary data in the paper "A Survey and Systematic Assessment of Computational Methods for Drug Response Prediction"☆12Sep 27, 2019Updated 6 years ago
- RefDNN: a reference drug based neural network for more accurate prediction of anticancer drug resistance (Scientific Reports)☆14Apr 21, 2022Updated 3 years ago
- Implementation of "Semi-supervised learning of hierarchical representations of molecules using neural message passing" (arXiv:1711.10168)☆14Jun 20, 2018Updated 7 years ago
- Implementation of ReSimNet for drug response similarity prediction☆40Dec 20, 2023Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Machine Learning predictions of cancer cell sensitivity to different drugs using data from CCLE (Cancer Cell Line Encyclopedia).☆15Feb 6, 2017Updated 9 years ago
- PyTorch implementation of "TGSA: Protein-Protein Association-Based Twin Graph Neural Networks for Drug Response Prediction with Similarit…☆23Dec 15, 2021Updated 4 years ago
- ☆11Apr 19, 2019Updated 6 years ago
- MATLAB implementation of Gene Set Enrichment Analysis (GSEA) method for finding pathways which can show more complex relation between cha…☆10Sep 7, 2022Updated 3 years ago
- Improved Scaffold Hopping in Ligand-based Virtual Screening Using Neural Representation Learning☆21Mar 9, 2021Updated 5 years ago
- CADRE: Contextual Attention-based Drug REsponse☆12Nov 23, 2020Updated 5 years ago
- ☆13Apr 1, 2023Updated 2 years ago
- OncoNetExplainer: Explainable Prediction of Cancer Types Based on Gene Expression Data☆11Feb 28, 2023Updated 3 years ago
- Deep-Learning framework for multi-omic and survival data integration☆86Dec 20, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- A visible neural network model for drug response prediction☆153Sep 13, 2023Updated 2 years ago
- DeepTTC: a transformer-based model for predicting cancer drug response☆19Jun 1, 2023Updated 2 years ago
- TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade…☆41Mar 13, 2026Updated 2 weeks ago
- R package☆22Dec 16, 2023Updated 2 years ago
- An implementation of the Latent Gan as discribed in the publication [cite]☆64Apr 2, 2021Updated 4 years ago
- Pathway-based sparse deep neural network for survival analysis☆40Jul 6, 2023Updated 2 years ago
- ☆21Feb 19, 2020Updated 6 years ago
- GraphCDR: A graph neural network method with contrastive learning for cancer drug response prediction☆31Sep 27, 2021Updated 4 years ago
- Multi-study integration of cellular trajectories☆19Jun 1, 2020Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- deconvolution for RNAseq and bisulfite sequencing☆11Aug 17, 2020Updated 5 years ago
- HiGCN: a hierarchical graph convolution network for representation learning of gene expression data☆14Jan 24, 2021Updated 5 years ago
- Mol2vec notebooks for use with Binder service☆29Mar 24, 2018Updated 8 years ago
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆51Jul 6, 2023Updated 2 years ago
- ☆17Apr 5, 2020Updated 5 years ago
- R package for metabolic enzyme enrichment anaylsis☆13Oct 24, 2025Updated 5 months ago
- ☆21Sep 4, 2020Updated 5 years ago
- DCAP:Integrating multi-omics data with deep learning for predicting cancer prognosis☆21Feb 5, 2021Updated 5 years ago
- Improving Personalized Prediction of Cancer Prognoses with Clonal Evolution Models☆22Sep 23, 2019Updated 6 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- MOGONET (Multi-Omics Graph cOnvolutional NETworks) is a novel multi-omics data integrative analysis framework for classification tasks in…☆177Mar 31, 2021Updated 4 years ago
- A lightweight visualization tool for molecules and their properties☆15Sep 19, 2017Updated 8 years ago
- Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports☆11May 25, 2023Updated 2 years ago
- A supervised learning model based on Graph Neural Network to predict gene co-expression from chromatin contacts☆12Mar 22, 2023Updated 3 years ago
- Search public databases for given genotypic information☆11Mar 21, 2018Updated 8 years ago
- ☆26Dec 4, 2019Updated 6 years ago
- Testing a neutral evolution model on cancer sequencing data☆10Feb 17, 2021Updated 5 years ago