hosseinshn / MOLIView external linksLinks
MOLI: Multi-Omics Late Integration with deep neural networks for drug response prediction
☆55Sep 22, 2020Updated 5 years ago
Alternatives and similar repositories for MOLI
Users that are interested in MOLI are comparing it to the libraries listed below
Sorting:
- Cancer Drug Response Prediction via a Hybrid Graph Convolutional Network☆100Jun 26, 2023Updated 2 years ago
- RefDNN: a reference drug based neural network for more accurate prediction of anticancer drug resistance (Scientific Reports)☆14Apr 21, 2022Updated 3 years ago
- The Supplementary data in the paper "A Survey and Systematic Assessment of Computational Methods for Drug Response Prediction"☆12Sep 27, 2019Updated 6 years ago
- Implementation of ReSimNet for drug response similarity prediction☆40Dec 20, 2023Updated 2 years ago
- Implementation of "Semi-supervised learning of hierarchical representations of molecules using neural message passing" (arXiv:1711.10168)☆14Jun 20, 2018Updated 7 years ago
- Improved Scaffold Hopping in Ligand-based Virtual Screening Using Neural Representation Learning☆21Mar 9, 2021Updated 4 years ago
- R package☆22Dec 16, 2023Updated 2 years ago
- Multi-study integration of cellular trajectories☆19Jun 1, 2020Updated 5 years ago
- Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports☆11May 25, 2023Updated 2 years ago
- TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade…☆38Updated this week
- ☆23Jun 5, 2021Updated 4 years ago
- CircRNA testing and ploting R package☆10Nov 23, 2020Updated 5 years ago
- Testing a neutral evolution model on cancer sequencing data☆10Feb 17, 2021Updated 4 years ago
- A pipeline for Smooth-seq data analysis.☆10Sep 23, 2021Updated 4 years ago
- ☆13Apr 1, 2023Updated 2 years ago
- MATLAB implementation of Gene Set Enrichment Analysis (GSEA) method for finding pathways which can show more complex relation between cha…☆10Sep 7, 2022Updated 3 years ago
- Graph Neural Networks for Drug Efficacy Prediction☆11Sep 11, 2022Updated 3 years ago
- ☆11Apr 19, 2019Updated 6 years ago
- Inferring selection in cancer sequencing data using ABC and population based simulations☆11Jan 31, 2021Updated 5 years ago
- R package for metabolic enzyme enrichment anaylsis☆13Oct 24, 2025Updated 3 months ago
- A unified and modular interface to homology modelling software☆12Sep 27, 2023Updated 2 years ago
- ☆10Mar 11, 2025Updated 11 months ago
- Protein design and variant prediction using autoregressive generative models☆24Feb 27, 2023Updated 2 years ago
- Mol2vec notebooks for use with Binder service☆29Mar 24, 2018Updated 7 years ago
- An implementation of the Latent Gan as discribed in the publication [cite]☆64Apr 2, 2021Updated 4 years ago
- ☆14Feb 4, 2026Updated last week
- Target prediction☆13May 8, 2020Updated 5 years ago
- Bullseye analysis pipeline for DART-seq analysis☆15Jul 8, 2025Updated 7 months ago
- ChemoPy: freely available python package for computational biology and chemoinformatics.☆13May 30, 2021Updated 4 years ago
- Code available for the quantitative pharmacophores☆12Sep 7, 2022Updated 3 years ago
- DNN-DTIs: improved drug-target interactions prediction using XGBoost feature selection and deep neural network☆12Mar 5, 2021Updated 4 years ago
- Python Modeling Interface☆14Dec 18, 2025Updated last month
- VirusScan Pipeline☆12Feb 7, 2026Updated last week
- R package for nucleotide conversion sequencing data analysis☆16Jan 13, 2026Updated last month
- deconvolution for RNAseq and bisulfite sequencing☆11Aug 17, 2020Updated 5 years ago
- Deep-Learning framework for multi-omic and survival data integration☆87Dec 20, 2023Updated 2 years ago
- IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening☆28Aug 20, 2024Updated last year
- PyTorch implementation of "TGSA: Protein-Protein Association-Based Twin Graph Neural Networks for Drug Response Prediction with Similarit…☆23Dec 15, 2021Updated 4 years ago
- ☆30Jul 15, 2021Updated 4 years ago